A clear beach with turquoise water, a sandy shore, and buildings in the background.

Aegean Islands Hotel Guide - Boutique Hotels in Aegean Islands, Greece

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Aegean Islands Boutique Hotels

Tonight
2 Oct - 3 Oct
Tomorrow
3 Oct - 4 Oct
This weekend
2 Oct - 4 Oct
Next weekend
9 Oct - 11 Oct

Our top choices for Aegean Islands boutique hotels

A breakfast table with croissants, fruit, pancakes, and orange juice, overlooking a harbor with boats and white buildings.
A modern, minimalist bedroom with a large bed, a sofa, a TV, and a view of the outdoors.
A view from a balcony overlooking a swimming pool, a Christmas tree, and a marina with boats.
A modern kitchen with white cabinets, a wooden countertop, and a built-in dishwasher. There is a round woven rug on the floor, and pendant lights hang above the island.

1. Kouros Village

Kouros Village
Antiparos
United States
Efrosini
€83
includes taxes & fees
4 Oct - 5 Oct
Kouros Village
A modern outdoor seating area with a sofa, two wicker chairs, a round table, and a hanging light fixture.
A reception area with a modern design, featuring a reception desk, framed pictures on the wall, and pendant lighting.
A seating area with wicker chairs, a round table, and shelves with decorative items.
A neatly arranged bedroom with a large bed, bedside lamps, a nightstand, a mirror, and a bedside table.

2. APOLLON Design Boutique Hotel

APOLLON Design Boutique Hotel
Paros
United States
Anastasios
€77
includes taxes & fees
18 Oct - 19 Oct
APOLLON Design Boutique Hotel
A pool area with lounge chairs and umbrellas, surrounded by palm trees.
A woman walking through an arched doorway with a patterned dress and a hat.
A view from a window overlooking a pool area with two water fountains, a bench, and a palm tree.
A marina with boats docked, a building with a flag, and people dining at tables.

3. Yria Boutique Hotel & Spa

Yria Boutique Hotel & Spa
Paros
United Kingdom
MAYANK
€290
includes taxes & fees
3 Oct - 4 Oct
Yria Boutique Hotel & Spa
A modern indoor pool area with a wooden deck, a glass door leading to a bedroom, and circular wall lights.
A modern spa area with a rectangular hot tub, dark wooden flooring, and minimalist decor.
A modern white building with multiple balconies and staircases.
A modern, well-lit room with a wooden desk, a comfortable chair, a flat-screen TV, and a bed.

4. Argo Boutique Hotel

Argo Boutique Hotel
Old Town Naxos
Canada
Melinda
€89
includes taxes & fees
31 Oct - 1 Nov
Argo Boutique Hotel
A swimming pool with a clear view of the water, a white poolside area, and two empty glasses on a white surface.
A spacious bedroom with a large bed, a bathroom with a large mirror, and a view of the sea.
A waterfront resort with outdoor seating, a pool, and boats in the background.
A spacious indoor area with a high ceiling, modern chandeliers, and a view of the sea through large windows.

5. Nissaki Boutique Hotel

Nissaki Boutique Hotel
Mykonos
United States
Melissa
€248
includes taxes & fees
3 Oct - 4 Oct
Nissaki Boutique Hotel
A poolside area with lounge chairs and a person swimming.
A modern, well-lit living room with a sofa, coffee table, and a round rug. A mirror and pendant lights are visible.
A modern bedroom with a large bed, a bedside table, a mirror, and a wall-mounted light fixture.
A modern kitchen with a black bowl on the counter, a white sofa with patterned cushions, and a minimalist shelving unit in the background.

6. Anapollo Boutique Hotel - Adults Only

Anapollo Boutique Hotel - Adults Only
Old Town Naxos
United States
Christopher
€124
includes taxes & fees
25 Oct - 26 Oct
Anapollo Boutique Hotel - Adults Only
A poolside dining area with a table set for two, overlooking a pool with a view of the sea and distant hills.
A coastal view with a clear blue sea, a sandy beach, and a distant hill with buildings.
A modern hotel room with a bed, a sofa, a desk, and a TV.
A hotel room with a large bed, a desk, a chair, and a TV. There are large windows with a view of the sea.

7. Grace Mykonos

Grace Mykonos
Mykonos
Canada
Qing
€171
includes taxes & fees
3 Oct - 4 Oct
Grace Mykonos
A coastal beach with clear turquoise water, rocky shoreline, and a backdrop of mountains and white buildings.
A poolside bar with stone walls and wicker chairs, a stone counter, and a view of the mountains in the background.
A modern living room with a round aquarium, a sofa, a chair, and a table with candles.
A hotel room with a bed, a chair, a vase with flowers, and a view of the sea through a window.

8. Lagos Mare Hotel

Lagos Mare Hotel
Naxos
United States
Claudia
€93
includes taxes & fees
10 Oct - 11 Oct
Lagos Mare Hotel
A modern hotel with a rooftop pool, outdoor seating areas, and multiple balconies.
A person sitting at a table with a view of the sea and a slice of watermelon on the table.
A bedroom with a bed, bedside tables, a wardrobe, and a mirror.
An aerial view of a beach with several large, round, dark objects scattered along the shoreline.

9. Parian Boutique Hotel

Parian Boutique Hotel
Paros
United States
wagner
€184
includes taxes & fees
4 Oct - 5 Oct
Parian Boutique Hotel
An infinity pool with white lounge chairs, a stone wall, and a view of the sea and hills.
A covered outdoor seating area with a stone wall backdrop, a wooden bench, and a bar counter with toiletries.
A modern hotel room with a large bed, a balcony with a view of the sea, and a small table with a bowl of fruit.
A round table with a white vase and pampas grass, surrounded by wicker chairs, overlooking a pool and ocean view.

10. NOS Hotel & Villas

NOS Hotel & Villas
Sifnos
United States
Carla
€361
includes taxes & fees
8 Oct - 9 Oct
NOS Hotel & Villas
View all properties

Top Aegean Islands Hotel Reviews

Hotel Sunny Villas

Hotel Sunny Villas

10/10 Excellent
"We enjoyed our stay at Sunny Villas, we were there for 2 nights. The room was a cave in the rocky wall, very authentic! Tthe staff was very helpful, especially Helena. She helped us with local recommendations and how to find transportation. Know that there are steep steps to get to the “apartment “, this is not your average hotel room. The views are amazing. The breakfast was great, you get to order certain things from a prearranged menu. The downfall is they only start at 8:30 and they deliver it to your room, if you plan to leave earlier it may not be available. The first day we waited about an hour but in the end it worked it out ok. The location is great, walking distance to Fira with beautiful caldera views, took us about 2.5 hours to hike to Oia. Not an easy hike, but definitely worth it. Thank you Sunny Villas for having us!"
Ioana 2-night trip
Posted 2 days ago
Hotel Sunny Villas
White Pearl Villas

White Pearl Villas

10/10 Excellent
"Amazing that it’s AMAZING"
Jonathan 5-night trip
Posted 3 days ago
White Pearl Villas
Ira Hotel & Spa - Adults Only

Ira Hotel & Spa - Adults Only

10/10 Excellent
"El hotel en general está en buenas condiciones, limpio y el personal siempre amable y atento para ayudar resolviendo dudas, la habitación excelente vista un súper plus saliendo teníamos la piscina. También súper cercano a tiendas de souvenirs y algunas opciones de buenos restaurantes con excelentes vistas !"
Eva 2-night trip
Posted 6 days ago
Ira Hotel & Spa - Adults Only