A harbor with multiple sailboats and a bridge in the background.

San Diego Hotel Guide. Hotels in Harbor Island, San Diego, United States of America

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Check prices for these dates

Next weekend
18 Sept - 20 Sept
In two weeks
25 Sept - 27 Sept

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Our top choices for Harbor Island hotels

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

1. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,218 reviews)
"Excellent place to stay"
United States
Amos
The price is €162
includes taxes & fees
20 Sept - 21 Sept
Hilton San Diego Airport/Harbor Island
A balcony with wicker furniture overlooking a marina and a coastal cityscape.

2. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,690 reviews)
"Great place"
United States
Kathleen
The price is €211
includes taxes & fees
27 Sept - 28 Sept
Sheraton San Diego Resort
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,713 reviews)
"Loved the staff and location."
United States
David
The price is €186
includes taxes & fees
28 Sept - 29 Sept
Hampton Inn & Suites San Diego Airport Liberty Station
A balcony with a table set for two, overlooking a marina with numerous boats.

4. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (3,920 reviews)
"We loved staying here!"
United States
Jennifer
The price is €161
includes taxes & fees
14 Sept - 15 Sept
Bay Club Hotel & Marina
A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

5. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
2.1 km from Harbor Island
8.6 out of 10, Excellent, (1,070 reviews)
"Property was well kept and area was nice"
United States
Jorge
The price is €116
includes taxes & fees
14 Sept - 15 Sept
Sea Harbor Hotel
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

6. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,683 reviews)
"Amazing place location and hotel staff were amazing."
United States
Orlyn
The price is €202
includes taxes & fees
20 Sept - 21 Sept
Homewood Suites by Hilton San Diego Airport/Liberty Station
A resort with two-story buildings, balconies, and a pool area.

7. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,113 reviews)
"we enjoyed our stay!"
United States
Laura
The price is €205
includes taxes & fees
4 Oct - 5 Oct
Humphreys Half Moon Inn
A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

8. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,085 reviews)
"Amazing stay."
United States
Faleoalii Iereneo
The price is €143
includes taxes & fees
23 Sept - 24 Sept
Holiday Inn Express San Diego Airport - Old Town by IHG
A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

9. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 2.9 km from Harbor Island
8.2 out of 10, Very good, (2,049 reviews)
"Friendly staff and great breakfast!"
Canada
Heather
The price is €116
includes taxes & fees
22 Sept - 23 Sept
Comfort Inn San Diego Old Town
A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

10. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,170 reviews)
"Great place to stay!"
United States
Nayla
The price is €95
includes taxes & fees
20 Sept - 21 Sept
Wyndham Garden San Diego Near SeaWorld
A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

11. Old Town Inn

Old Town Inn
2.5 star property
3 km from Harbor Island
9.0 out of 10, Wonderful, (1,969 reviews)
"Great place to stay!!!"
United States
Layne
The price is €149
includes taxes & fees
21 Sept - 22 Sept
Old Town Inn
A hotel entrance with a covered outdoor area, palm trees, and a white building with multiple windows and balconies.

12. Courtyard by Marriott Old Town

Courtyard by Marriott Old Town
3.0 star property
Old Town San Diego, 3 km from Harbor Island
8.8 out of 10, Excellent, (1,003 reviews)
"I loved the hotel and it is blocks away from the Old Town attractions."
United States
Paola
The price is €151
includes taxes & fees
28 Sept - 29 Sept
Courtyard by Marriott Old Town
An outdoor patio area with tables and chairs, string lights, and a building with balconies.

13. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 3 km from Harbor Island
8.8 out of 10, Excellent, (1,181 reviews)
"Overall, great place to stay."
United States
David
The price is €142
includes taxes & fees
27 Sept - 28 Sept
Fairfield Inn & Suites San Diego Old Town
A hotel with a central courtyard, palm trees, and a fountain.

14. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,504 reviews)
"great location, excellent hotel"
United States
Edward Palacios
The price is €132
includes taxes & fees
28 Sept - 29 Sept
Hilton Garden Inn San Diego Old Town/SeaWorld Area
A historic building with a central courtyard and a reflective water feature.

15. Old Town Western Inn & Suites

Old Town Western Inn & Suites
2.5 star property
Old Town San Diego, 2.9 km from Harbor Island
8.0 out of 10, Very good, (1,002 reviews)
"Hotel was clean and in a great location to many restaurants and activities"
United States
Stephanie
The price is €91
includes taxes & fees
5 Oct - 6 Oct
Old Town Western Inn & Suites
A hotel courtyard with outdoor seating, palm trees, and a view of the ocean at dusk.

16. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,312 reviews)
"Great place to stay"
United States
Jennifer
The price is €182
includes taxes & fees
20 Sept - 21 Sept
Wyndham San Diego Bayside
A modern lobby with a stone wall, blue sofas, a reception desk, and a staircase.

17. Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.7 km from Harbor Island
8.8 out of 10, Excellent, (3,748 reviews)
"Love this hotel, will be back endlessly love it here!"
United States
Armando
The price is €80
includes taxes & fees
13 Oct - 14 Oct
Kings Inn San Diego
A seaside restaurant with outdoor seating overlooking the ocean, a pier in the background, and a clear sky.

18. Ocean Beach Hotel

Ocean Beach Hotel
3.0 star property
Ocean Beach, 5 km from Harbor Island
8.8 out of 10, Excellent, (1,468 reviews)
"Lovely stay will be coming back!"
United States
Diana
The price is €145
includes taxes & fees
30 Sept - 1 Oct
Ocean Beach Hotel
A reception desk with a wooden panel wall, a crescent-shaped logo, and a digital payment terminal.

19. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.3 km from Harbor Island
8.6 out of 10, Excellent, (4,101 reviews)
"Great location and friendly."
United States
Rick
The price is €114
includes taxes & fees
22 Sept - 23 Sept
Comfort Inn Sea World Area

20. Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
3.3 km from Harbor Island
8.2 out of 10, Very good, (2,739 reviews)
"Great one night stay"
United States
OMAR
The price is €135
includes taxes & fees
21 Sept - 22 Sept
Hampton Inn San Diego-Downtown
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.
A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

A pier at sunset with people sitting and standing, waves crashing below.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

A theater marquee with ornate designs and the name "Gaslamp Quarter".

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

Top Harbor Island Hotel Reviews

Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego

8/10 Good
"We stay here every year"
Karen 3-night trip
Posted 1 hour ago
Manchester Grand Hyatt San Diego

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best place to stay in Harbor Island?
Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.
How many hotels should I expect to find in the Harbor Island area?
Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.
What is there to do around this San Diego neighbourhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Marine Corps Recruit Depot or Port of San Diego.