Mykonos Hotel Guide - Boutique Hotels in Mykonos, South Aegean

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Mykonos Boutique Hotels

No exact matches found, but these alternatives could be just right

Recommended hotels in Mykonos

Interior
Oniro Suites

Oniro Suites

Oniro Suites
Mykonos
9.4 out of 10, Exceptional, (99)
"Zoe is perfect! She lovely. We felt like own home. "
Brazil
Johnnatan
The price is €100
includes taxes & fees
19 Dec - 20 Dec
Oniro Suites
Suite (Polymneia) | Beach/ocean view
Mykonos Moussa Suites

Mykonos Moussa Suites

Mykonos Moussa Suites
Mykonos
9.8 out of 10, Exceptional, (94)
"Great hospitality. Great sea view. Close to nice beaches. "
United States
Osman
The price is €124
includes taxes & fees
19 Dec - 20 Dec
Mykonos Moussa Suites
Deluxe Double Room, 1 Bedroom, Partial Sea View | Balcony
Mersina Exclusive

Mersina Exclusive

Mersina Exclusive
Paros
9.6 out of 10, Exceptional, (144)
"The proprietor Anna was very welcoming and helpful with local information. She gave us a lot of inside information and was very accessible. I would definitely stay here again."
United States
Jeffrey
Mersina Exclusive
Pool
Shapes Luxury Suites

Shapes Luxury Suites

Shapes Luxury Suites
Syros
9.8 out of 10, Exceptional, (44)
"A beautiful hotel right in the heart of the city yet very quiet and well maintained. Staff was lovely and breakfast was wonderful "
United States
Carolyn
The price is €81
includes taxes & fees
19 Dec - 20 Dec
Shapes Luxury Suites
Interior
AK Mykonos

AK Mykonos

AK Mykonos
Mykonos
9.8 out of 10, Exceptional, (62)
"Great location, friendly staff, very clean, great value."
United States
Liv
AK Mykonos
Front of property – evening/night
Guesthouse Lila

Guesthouse Lila

Guesthouse Lila
4.0 star property
Syros
10.0 out of 10, Exceptional, (23)
"Generous, warm, beautiful building. "
United States
Jan
Guesthouse Lila
In-room safe, iron/ironing board, free WiFi, bed sheets
Eternal Town

Eternal Town

Eternal Town
Mykonos
9.4 out of 10, Exceptional, (35)
"Very nice and clean studio - would stay again!"
United States
Christopher
The price is €39
includes taxes & fees
22 Dec - 23 Dec
Eternal Town
Villa, 3 Bedrooms, Private Pool | Terrace/patio
Seacode Villas

Seacode Villas

Seacode Villas
Mykonos
10.0 out of 10, Exceptional, (17)
"Beautiful property with amazing views, private pool, hot tub, onsite parking and walkable to beach. This was an amazing 3 bedroom property with amazing views of the sea and beach. Pool, outdoor kitchen and hot tub were very nice. "
United States
Perianan
The price is €108
includes taxes & fees
15 Jan - 16 Jan 2026
Seacode Villas
Outdoor pool, pool umbrellas, pool loungers
Niriides Homes & Villas

Niriides Homes & Villas

Niriides Homes & Villas
Mykonos
9.6 out of 10, Exceptional, (141)
"Amazing accommodation Great location if you have car Can be noisy if too windy"
Australia
Michael
The price is €60
includes taxes & fees
19 Dec - 20 Dec
Niriides Homes & Villas
Grand Triple Room
VE ZO Suites Mykonos

VE ZO Suites Mykonos

VE ZO Suites Mykonos
4.0 star property
Mykonos
10.0 out of 10, Exceptional, (13)
"The hotel was great and very spacious. The pool was beautiful, the property was family-friendly, and the location was excellent. I would definitely recommend it. Newport is also within walking distance. The host was extremely helpful, and I truly appreciated the hospitality."
United States
Rikin
The price is €74
includes taxes & fees
1 Jan - 2 Jan 2026
VE ZO Suites Mykonos
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Mykonos Hotel Reviews

Harmony Boutique Hotel

Harmony Boutique Hotel

10/10 Excellent
"Went late November, great hotel but the town is very quiet at this time of the year "
Marc 3-night trip
Posted 3 weeks ago
Harmony Boutique Hotel

Frequently asked questions

Searching for a unique accommodation option for your visit to Mykonos?
If you want to find a small hotel with outstanding service, a personal feel, and good ambiance, a boutique hotel may be exactly what you want. Select from 16 boutique accommodation options in Mykonos to find a property that represents the local spirit of this area.
What's the best boutique accommodation in Mykonos?
Nissaki Boutique Hotel is a favourite hotel with our travellers looking for stylish accommodation, and features 44 guestrooms, a private beach and a poolside restaurant. Axel Beach Mykonos - Adults Only and Boheme Mykonos Town - Small Luxury Hotels of the World are two other options for a boutique stay.
How many boutique hotels will I find in Mykonos?
Expedia has 16 boutique hotels in Mykonos.
What's there to see and do in Mykonos?
Visitors speak positively about this destination's breathtaking beach views, fantastic nightlife and beautiful island views. Matoyianni Street, Aegean Maritime Museum and Mykonos Town Hall are some of the local sights worth visiting. You might also want to consider exploring Church of Panagia Paraportiani, Fabrica Square and Mykonos Old Port while you're here.
What kind of weather should I plan for when I travel to Mykonos?
Understanding the weather in Mykonos is important when planning your trip. The hottest months are usually August and July, with an average temperature of 24°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Mykonos is 384 mm.
What's the best way to get to my boutique hotel in Mykonos?
You have a few options for travelling to and around Mykonos. The nearest major airport is Mykonos (JMK-Mykonos Island National), which is located 1.3 mi (2 km) from the heart of the city, but Ermoupolis (JSY-Syros Island National) may also be an option. If you'd like to explore around the area, you may want to rent a car for your trip.

Explore a world of travel with Expedia