A harbor with multiple sailboats and a bridge in the background.

San Diego Hotel Guide. Hotels in Harbor Island, San Diego, United States of America

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Check prices for these dates

This weekend
30 Oct - 1 Nov
Next weekend
6 Nov - 8 Nov

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Our top choices for Harbor Island hotels

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

1. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,782 reviews)
"I would stay here again"
United States
James
The price is €165
includes taxes & fees
22 Nov - 23 Nov
Sheraton San Diego Resort
A marina with boats docked, a balcony with chairs, and a view of the water.

2. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,224 reviews)
"Excellent place to stay"
United States
Amos
The price is €168
includes taxes & fees
22 Nov - 23 Nov
Hilton San Diego Airport/Harbor Island
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,744 reviews)
"Love to stay here, very nice accommodations, quiet, great service, the airport shuttle very convenient."
United States
MANUEL
The price is €151
includes taxes & fees
22 Nov - 23 Nov
Hampton Inn & Suites San Diego Airport Liberty Station
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,708 reviews)
"Very pleasant stay."
United States
Alicia
The price is €188
includes taxes & fees
10 Nov - 11 Nov
Homewood Suites by Hilton San Diego Airport/Liberty Station
A resort with two-story buildings, balconies, and a pool area.

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,164 reviews)
"We had a great stay!"
United States
Svenja
The price is €181
includes taxes & fees
23 Nov - 24 Nov
Humphreys Half Moon Inn
A balcony with a table set for two, overlooking a marina with numerous boats.

6. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (4,052 reviews)
"Excellent stay!"
Canada
Victoria
The price is €156
includes taxes & fees
9 Nov - 10 Nov
Bay Club Hotel & Marina
A modern dining area with multiple tables and chairs, large windows, and artwork on the walls.

7. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 2.9 km from Harbor Island
8.2 out of 10, Very good, (2,079 reviews)
"Breakfast was great"
United States
George
The price is €114
includes taxes & fees
17 Nov - 18 Nov
Comfort Inn San Diego Old Town
A hotel lobby with a waterfall feature, outdoor seating area, and multiple floors with balconies.

8. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very good, (1,452 reviews)
"Great hotel"
United States
Thao
The price is €117
includes taxes & fees
29 Oct - 30 Oct
Crowne Plaza San Diego - Mission Valley by IHG
A hotel entrance with a stone archway, a reception desk, and potted plants.

9. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,105 reviews)
"Love the hotel, the breakfast was good and the staff was exceptional."
United States
Patricia
The price is €140
includes taxes & fees
1 Nov - 2 Nov
Holiday Inn Express San Diego Airport - Old Town by IHG
A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

10. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,188 reviews)
"great stay"
United States
Sarah
The price is €99
includes taxes & fees
3 Nov - 4 Nov
Wyndham Garden San Diego Near SeaWorld
A grand lobby with marble floors, a chandelier, and ornate doors.

11. Gaslamp Plaza Suites

Gaslamp Plaza Suites
3.5 star property
Gaslamp Quarter, 4.5 km from Harbor Island
9.0 out of 10, Wonderful, (1,247 reviews)
"I love the stay I will definitely be back!!! Everything was super close walking distance parking was great next door awesome"
United States
George
The price is €141
includes taxes & fees
9 Nov - 10 Nov
Gaslamp Plaza Suites
A hotel courtyard with outdoor seating, palm trees, and a view of the ocean at dusk.

12. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,341 reviews)
"Close to sites and staff was very kind and helpful"
United States
Sarah
The price is €189
includes taxes & fees
29 Oct - 30 Oct
Wyndham San Diego Bayside
An outdoor patio area with tables and chairs, string lights, and a building with balconies.

13. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 3 km from Harbor Island
8.8 out of 10, Excellent, (1,216 reviews)
"great Breakfast and Great Location"
United States
Daniel
The price is €126
includes taxes & fees
15 Nov - 16 Nov
Fairfield Inn & Suites San Diego Old Town
A balcony with a wicker chair, a view of high-rise buildings, and a small garden area.

14. Ash&9th

Ash&9th
2.0 star property
4.7 km from Harbor Island
8.2 out of 10, Very good, (1,078 reviews)
"Staff was very helpful and location was excellent."
United States
andrew h
The price is €65
includes taxes & fees
17 Nov - 18 Nov
Ash&9th
A building with a sign reading "the Pearl" and a modern architectural style.

15. The Pearl Hotel

The Pearl Hotel
4.0 star property
2.1 km from Harbor Island
8.8 out of 10, Excellent, (1,002 reviews)
"Always enjoy staying at The Pearl"
United States
Jane
The price is €159
includes taxes & fees
3 Nov - 4 Nov
The Pearl Hotel
A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

16. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
2.1 km from Harbor Island
8.4 out of 10, Very good, (1,092 reviews)
"The location is great."
United States
Roxanne
The price is €105
includes taxes & fees
10 Nov - 11 Nov
Sea Harbor Hotel
A reception desk with a wooden panel wall, a crescent-shaped logo, and a digital payment terminal.

17. Comfort Inn San Diego - SeaWorld Area

Comfort Inn San Diego - SeaWorld Area
3.5 star property
3.4 km from Harbor Island
8.6 out of 10, Excellent, (4,263 reviews)
"Nice stay"
United States
Jesus
The price is €111
includes taxes & fees
9 Nov - 10 Nov
Comfort Inn San Diego - SeaWorld Area
A hotel lobby with a 'Lobby' sign, palm trees, and a sunset sky.

18. Best Western Seven Seas

Best Western Seven Seas
3.0 star property
5.5 km from Harbor Island
7.8 out of 10, Good, (4,040 reviews)
"OUR STAY WAS GREAT. WE WERE IN TOWN FOR A SOCCER GAME AND THE PRICE AND PROXIMITY TO SNAPDRAGON WAS PERFECT."
United States
Cynthia
The price is €87
includes taxes & fees
29 Oct - 30 Oct
Best Western Seven Seas
A modern hotel with a courtyard featuring outdoor seating, a chess table, and a well-maintained lawn.

19. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.4 km from Harbor Island
9.2 out of 10, Wonderful, (1,458 reviews)
"Everything about this place was great."
United States
Evelin
The price is €148
includes taxes & fees
2 Nov - 3 Nov
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
A hotel room with a large window offering a city view, a bed, a chair, and a small table.

20. The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
4 km from Harbor Island
8.8 out of 10, Excellent, (2,329 reviews)
"Really enjoyed my stay!"
United States
Kelly
The price is €150
includes taxes & fees
23 Nov - 24 Nov
The DEXTRO Little Italy, BW Premier Collection
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels in Harbor Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A balcony with wicker furniture overlooking a marina and a coastal cityscape.
Sheraton San Diego Resort
4.0 star property
8.6
Excellent
3,782 reviews
View
A marina with boats docked, a balcony with chairs, and a view of the water.
Hilton San Diego Airport/Harbor Island
3.5 star property
8.8
Excellent
1,224 reviews
View
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,744 reviews
View
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,708 reviews
View
A resort with two-story buildings, balconies, and a pool area.
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
3,164 reviews
View

Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.
A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

A theater marquee with ornate designs and the name "Gaslamp Quarter".

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

8/10 Good
"Everything"
Lee-Ling 1-night trip
Posted 4 hours ago
Hyatt Regency Mission Bay Spa and Marina

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best place to stay in Harbor Island?
Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.
How many hotels should I expect to find in the Harbor Island area?
Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.
What is there to do around this San Diego neighbourhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Marine Corps Recruit Depot or Port of San Diego.