Yakushima Hotel Guide - Yakushima Botanical Research Park hotels in Yakushima, Japan.

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29 Dec - 30 Dec
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30 Dec - 31 Dec
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2 Jan - 4 Jan
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9 Jan - 11 Jan

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Our top choices for Yakushima Botanical Research Park hotels

Deluxe Villa | Balcony view
Cottage HANA MANA

Cottage HANA MANA

Cottage HANA MANA
2.5 star property
0.4 km from Yakushima Botanical Research Park
10.0 out of 10, Exceptional, (6)
"Amazing cottage set in a beautiful location with views of the surrounding mountains and forests that reminded us of Hawaii. The property features an outdoor onsen, a well equipped kitchen and is comfortably furnished throughout. Hana Mana is the perfect getaway for a couple or family visiting Yakushima."
United States
Tom
Cottage HANA MANA
Hot springs
samana hotel Yakushima

samana hotel Yakushima

samana hotel Yakushima
3.5 star property
4.1 km from Yakushima Botanical Research Park
9.8 out of 10, Exceptional, (110)
"Spacious rooms, clean bathrooms and very friendly staff. Self serve laundry was a huge plus. Breakfast buffet had a little of options and was well stocked. We enjoyed our two nights here and would return to the same hotel if ever back in Yakushima. "
United States
Mary
The price is €324
5 Jan - 6 Jan 2026
samana hotel Yakushima
Lobby lounge
Yakushima Iwasaki Hotel

Yakushima Iwasaki Hotel

Yakushima Iwasaki Hotel
3.5 star property
4.7 km from Yakushima Botanical Research Park
8.2 out of 10, Very good, (34)
"Stunning views, can walk to hiking in National Park, very helpful staff"
United States
Louise
The price is €194
3 Jan - 4 Jan 2026
Yakushima Iwasaki Hotel
Property entrance
Yakushima Guesthouse Suginoko

Yakushima Guesthouse Suginoko

Yakushima Guesthouse Suginoko
2.5 star property
10.8 km from Yakushima Botanical Research Park
9.2 out of 10, Wonderful, (46)
"Amazing staff. And the lunch bentos were delicious. Highly recommend."
Canada
Chris
The price is €50
6 Jan - 7 Jan 2026
Yakushima Guesthouse Suginoko
Cottage Type B
Cottage Morinokokage

Cottage Morinokokage

Cottage Morinokokage
2.5 star property
11.4 km from Yakushima Botanical Research Park
9.4 out of 10, Exceptional, (82)
"What a wonderful place to stay on Yakushima Island!"
Australia
Anonymous traveller
The price is €87
17 Jan - 18 Jan 2026
Cottage Morinokokage
Front of property – evening/night
Yakushima Green Hotel

Yakushima Green Hotel

Yakushima Green Hotel
3.0 star property
10.4 km from Yakushima Botanical Research Park
8.8 out of 10, Excellent, (164)
"Ocean view was very nice. shopping limited"
United States
Jesper
The price is €113
30 Dec - 31 Dec
Yakushima Green Hotel
Lobby sitting area
Hotel Yakushima Sanso

Hotel Yakushima Sanso

Hotel Yakushima Sanso
3.0 star property
7.1 km from Yakushima Botanical Research Park
8.0 out of 10, Very good, (12)
"古いホテルです。フロントは6階でその下に部屋があります。高低差のある建物で、入ったのが1階で戸惑いました。ただスタッフは親切だったのでよかったです。"
Japan
Chisato
Hotel Yakushima Sanso
Garden
Sen-no-ie

Sen-no-ie

Sen-no-ie
2.5 star property
19.2 km from Yakushima Botanical Research Park
10.0 out of 10, Exceptional, (14)
"Beautiful location, lovely staff, charming accommodation - highly recommended!"
United Kingdom
Robert
The price is €101
9 Jan - 10 Jan 2026
Sen-no-ie
Hot springs
Yakushima Jomon No Yado Manten

Yakushima Jomon No Yado Manten

Yakushima Jomon No Yado Manten
3.0 star property
15.8 km from Yakushima Botanical Research Park
8.6 out of 10, Excellent, (102)
"The French Restaurant there is not to be missed"
Hong Kong SAR China
SZE WAI
Yakushima Jomon No Yado Manten
In-room safe, desk, free WiFi, bed sheets
Tashiro Bekkan

Tashiro Bekkan

Tashiro Bekkan
2.5 star property
18.7 km from Yakushima Botanical Research Park
8.4 out of 10, Very good, (44)
"This was a very nice place to stay in Miyanoura. The breakfast and dinner service was unexpected. Both were interesting and satisfying. The steam bath was excellent after a day of hiking. The staff here were very nice and helpful."
Canada
John Andrew
Tashiro Bekkan
Hot springs
2R Yakushima

2R Yakushima

2R Yakushima
3.0 star property
10.6 km from Yakushima Botanical Research Park
The price is €98
5 Jan - 6 Jan 2026
2R Yakushima
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Yakushima Botanical Research Park Hotel Reviews

Cottage Morinokokage

Cottage Morinokokage

10/10 Excellent
"Excellent view. Charming and spacious rooms. Owner and staff were kind and generous. Helped us navigate the bus system and dining in Yakushima."
Christopher 2-night trip
Posted 2 months ago
Cottage Morinokokage

Hotels near other Yakushima Botanical Research Park attractions

Senhiro Fall

Commune with nature and explore the great outdoors at Senhiro Fall during your travels in Yakushima. Wander the seaside or discover the area's mountain views.
See properties

Toroki Falls

Commune with nature and explore the great outdoors at Toroki Falls during your travels in Haru. Wander the seaside or discover the area's mountain views.
See properties

Frequently asked questions

What's the area like around Yakushima Botanical Research Park?
Yakushima Botanical Research Park is located in Yakushima. You'll find 17 hotels and other accommodations within a few miles for a convenient home base.
What's the best place to stay close to Yakushima Botanical Research Park?
Adjacent to Yakushima Botanical Research Park, Cottage HANA MANA is one of the top choices for your stay based on our traveller data, and this guest house offers free parking and private decks. Other good choices within a short distance include sankara hotel & spa Yakushima and Sankara Hotel & Spa Yakushima.
How many hotels will I be able to find close to Yakushima Botanical Research Park?
Expedia has 17 hotels and other accommodation options a few miles from Yakushima Botanical Research Park.
If I need to cancel the hotel reservation for my stay near Yakushima Botanical Research Park, will I receive a refund?
Yes, the majority of hotel bookings are refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your scheduled arrival. If you have a reservation that's non-refundable, it may still be possible to cancel it and be given a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then filter by "fully refundable" to view the best options available near Yakushima Botanical Research Park.