Ayios Thomas Hotels from €49 - Fully Refundable Options

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Hot tub

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Our top choices for Ayios Thomas hotels

A pool with a water feature, surrounded by chairs and trees.

A modern hotel room with a bed, a seating area, a TV mounted on the wall, and a view of the outdoors.

A pool surrounded by lounge chairs and a building with multiple balconies.

A pathway leading to a building with a mountainous backdrop.

1. Idi Hotel

Faistos

Erin

€77

includes taxes & fees

13 Oct - 14 Oct

A stone building with a wooden door and a small archway. There is a tree with purple flowers in front of the building.

A rustic stone room with a wooden bed, a fireplace, and a wooden table with a plate.

A courtyard with a rustic stone wall, a wooden door, and a small table.

An aerial view of a coastal area with a beach, a road, and a row of buildings with a pool.

2. Traditional Cretan Houses

Heraklion

Eric

€50

includes taxes & fees

30 Oct - 31 Oct

A modern bedroom with a large bed, a built-in sink, and a mirror.

A person sitting on a bean bag chair with a wooden table beside them, a cup, and a straw hat on the table.

A bar with wooden shelves stocked with various bottles, a bartender, and rustic decor.

A swimming pool with a person swimming, a stone wall, and a wooden pergola.

3. Manili Boutique Suites & Villas, an SLH Hotel

Archanes-Asterousia

Frederik

€103

includes taxes & fees

15 Oct - 16 Oct

A reception area with a sign for Gallery Suites, surrounded by tables and chairs, and a green wall with plants.

An outdoor seating area with a round wooden table and blue and red upholstered chairs. Behind the seating, there is a wine rack with various bottles.

An interior space with a sliding glass door leading to an outdoor area with a chair and a table.

A modern hotel room with a bed, a desk, a television, and a view of the outdoors.

4. Chapter 02 Gallery Suites

Heraklion

Kimberly

€80

includes taxes & fees

31 Oct - 1 Nov

A swimming pool with lounge chairs and umbrellas, surrounded by stone walls and a view of the landscape.

An outdoor dining area with tables and chairs arranged under a tree.

A dining area with tables set for a meal, a stone fireplace, and a mural on the wall.

An outdoor dining area with stone flooring and a view of the countryside.

5. Arolithos Traditional Cretan Village

Malevizi

Kevin

€62

includes taxes & fees

19 Oct - 20 Oct

A modern living room with a grey sofa, a coffee table with decorative items, a black partition, and a view of a bedroom with a bed and a wardrobe.

A modern bedroom with a large bed, a nightstand, a small table with a plant, and a balcony with a view of the city.

A modern coffee shop with a brick wall, a counter with various coffee machines, and shelves stocked with beverages.

A hotel entrance with a sign reading "STAY365 APART HOTEL" and vertical wooden slats.

6. Stay 365 Heraklion Apart Hotel

Heraklion

Ioannis

€85

includes taxes & fees

4 Oct - 5 Oct

A hotel entrance with a clear sign reading "sofia hotel".

A restaurant with outdoor seating by a pool, wooden tables and chairs, and a view of the pool area.

A spacious lobby with multiple seating areas, a fireplace, and a staircase leading to upper floors.

A pool area with lounge chairs, a lifebuoy, and outdoor seating.

7. Sofia Hotel

Nea Alikarnassos

Roberson

€74

includes taxes & fees

25 Oct - 26 Oct

A modern outdoor seating area with wicker furniture, large windows offering a city view, and a ceiling with recessed lighting.

A spacious indoor area with multiple tables and chairs, large windows offering views of the city, and a ceiling with exposed beams.

A hotel entrance with a reception desk, a glass door, and a sign reading 'MARVEL Deluxe Rooms'.

A hotel room with a large bed, a desk with a computer, a TV, and a shower area.

8. Marvel Deluxe Rooms

Nea Alikarnassos

Daniela

€59

includes taxes & fees

26 Oct - 27 Oct

A balcony with a table and chairs, overlooking a coastal landscape with a clear view of the sea and distant hills.

A spacious lobby with a high ceiling, ornate chandeliers, and a stone fireplace.

A pathway flanked by palm trees and neatly trimmed hedges, leading to a building with flags.

A view through a window with a clear blue sky, a flag, and a pathway leading to a beach.

9. Karteros Hotel

Hersonissos

Pantelis

€59

includes taxes & fees

5 Oct - 6 Oct

Two sun loungers with cushions and a hat on one, overlooking a beach with umbrellas and people.

A modern bathroom with a white sink, a toilet, and a glass-enclosed shower area.

A modern living room with a sofa, a dining table, and a TV.

A modern hotel room with a large bed, a glass shower enclosure, a wooden desk, and a painting on the wall.

10. Nuovo Crete By Sea - Adults Only

Malevizi

"Property is very quiet and in a location that is a five minute walk to the main strip of restaurants, cafes, bars etc The property is only 20 mins from the airport by taxi and is associated with a beach bar a couple of mins walk away that you go to for breakfast and use of the beach and pool. All the facilities are excellent and clean and fresh. Check in was easy and any questions we had were dealt with confidently by staff."

Ifeoma

€64

includes taxes & fees

16 Oct - 17 Oct

A room with a bed, a chair, a balcony, and a window with curtains.

A restaurant with high ceilings, pendant lighting, and a central bar area. Tables are arranged for dining, and there are stools near the bar.

A hotel room with a bed, a desk with a computer, a chair, a window, and a door leading to a balcony.

The exterior of the Asterion Hotel with a modern entrance, glass doors, and a reception area visible through the glass.

11. Asterion Hotel

Nea Alikarnassos

Antreas

€86

includes taxes & fees

31 Oct - 1 Nov

A beachside restaurant with outdoor seating and umbrellas, overlooking the sea.

A beachside lounge area with multiple sunbeds and thatched umbrellas.

An outdoor cafe with wicker furniture, hanging lights, and a view of the parking lot.

A room with a view of the beach, featuring two sofas with patterned cushions, a wooden coffee table, and a large window with blue curtains.

12. Yianna Caravel Suites "by Checkin" adults only

Malevizi

Edan

€99

includes taxes & fees

30 Oct - 31 Oct

A beach with clear water, people swimming, and a sandy shore.

A poolside area with lounge chairs and a swimming pool.

A hotel room with a bed, a desk, a TV, and a balcony with a view.

A buffet with various food items and condiments.

13. Sun Boutique Hotel - Adults Only

Malevizi

Earl

€47

includes taxes & fees

7 Oct - 8 Oct

A modern hotel lobby with a sofa, tables, and a reception desk.

A modern interior with a marble staircase, a potted plant, a wooden bookshelf, and a closed door.

A modern lobby with a reception desk, a staircase, and a large potted plant.

A modern hotel room with a glass partition, a wooden door, and a small desk with a coffee maker.

14. Nesean Plaza Hotel

Heraklion

"Our stay at the Nesean Plaza was so nice. This stay was a part of our Honeymoon. We got a bottle of champagne and a plate with fresh fruit when we arrived! The staff was very kind. And most important, the room was so clean! We got clean towels everyday. Breakfast was a buffet and had enough optione to choose from. If we go to Crete (Heraklion) we would stay in this hotel again. Really recommend this hotel!"

Hong thu thi

€111

includes taxes & fees

24 Oct - 25 Oct

A balcony with a table, chairs, and a potted plant.

A hotel reception area with a glass partition, a receptionist, and a reception desk.

A hotel room with a large bed, a desk, a chair, and a balcony with a view of buildings.

A conference room with a long table, blue chairs, and a projection screen.

15. Atrion Hotel

Heraklion

kevin

€81

includes taxes & fees

16 Oct - 17 Oct

A balcony with a view of the ocean, a table, and a chair.

A room with a view of the sea, a wooden desk with a plant, a decorative item, and a couch with a cushion.

A spacious living area with a large brown sofa, a dining table with chairs, and a view of the ocean through large windows.

A breakfast table with a variety of food items, including fruits, pastries, and a vase with flowers.

16. Kronos Hotel

Heraklion

Tayfun

€80

includes taxes & fees

31 Oct - 1 Nov

A modern hotel with a central swimming pool, multiple balconies, and outdoor seating areas.

An outdoor dining area with wicker chairs and tables, potted plants, and a modern building in the background.

A Galaxy Hotel entrance with a modern design, a palm tree, and a car interior visible through the window.

A modern hotel lobby with a clean, tiled floor, large potted plants, and a reception desk in the center.

17. Galaxy Hotel Iraklio

Heraklion

Andre

€122

includes taxes & fees

6 Oct - 7 Oct

A hotel with multiple balconies, a swimming pool, and a landscaped garden area.

A hotel room with a wooden ceiling, a bed, a desk, a chair, a sofa, and a dining table with fruits and glasses.

A hotel room with a large bed, a desk, a TV, and a balcony with a view of the mountains.

A circular stone fireplace with a chimney, surrounded by wicker baskets and jars.

18. Petousis Hotel & Suites

Malevizi

Andrew

€86

includes taxes & fees

31 Oct - 1 Nov

A rooftop terrace with a hot tub, seating area, and potted plants.

A modern hotel room with a wooden wardrobe, a dining area with a table and chairs, and a large mirror reflecting the room.

A modern pool area with a clear blue pool, surrounded by white walls and green plants.

A modern hotel room with a balcony, a round mirror, a sofa, a dining table, and a TV.

19. Captain Napoleon Paterakis CNP Luxurious Suites

Heraklion

Alison

€112

includes taxes & fees

6 Oct - 7 Oct

A beach with rows of sun loungers and umbrellas, a clear blue sky, and a calm sea.

A stone archway leading to a bar area with a stone wall backdrop and a view of the outdoors.

An aerial view of a resort with multiple swimming pools, sun loungers, and a well-maintained garden area.

A table with a pitcher and glasses of lemonade, a person in a blue swimsuit, and a view of the ocean.

20. Apollonia Beach Resort & Spa

Malevizi

"Everything was exactly what you'd expect from a quality holiday resort and spa. Our only regret was staying for just one night, which simply wasn't long enough to enjoy the many activities and facilities on offer. This is the kind of place best appreciated over several days, where you can truly switch off, relax, and do absolutely nothing if that's what you need. If you're planning a visit, I'd definitely recommend making it a multi-night stay to get the most out of the experience."

Lucie

€120

includes taxes & fees

11 Oct - 12 Oct

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Top Ayios Thomas Hotel Reviews

Lato Boutique Hotel

8/10 Good

"The room was clean and big. It had a great balcony, we actually had 2, a big one facing the harbor and a little one on the side."

Aquila Atlantis Hotel

10/10 Excellent

"We only stayed for one night, but really enjoyed our stay. The hotel is in a great location, everything was very clean, and the staff were friendly and helpful. The rooftop pool was a nice bonus and a great place to relax. Would definitely stay here again."

Peninsula Resort & Spa - All Inclusive

8/10 Good

"Staff were great, everything was clean, food was great. I only have 2 complaints really, 1. Between meals the snack bar didnt have much to eat so if you missed a meal even by a small bit you were stuck til the next meal. 2. The entertainment wasnt great. It felt like the activity people had a budget of like 0 bucks and mostly just played music. Would be nice to have more to do at the resort."

Mirabello Hotel

10/10 Excellent

"Great location. Helpfull staff ⭐️⭐️⭐️⭐️⭐️"

GDM Megaron Historical Monument Hotel

8/10 Good

"A very nice hotel. The room was large with nice furnishings and amenities. The bed was very comfortable. Downsides were that our window looked directly across at a strip club, and there were no outlets or charging ports near the bedside tables."

Artion City Boutique Hotel

8/10 Good

"I choose this spot over others because they mentioned a complimentary shuttle to square/ heart of town which was not the case. I don’t mind walking but I only have so many footsteps a day due to double foot surgery. Other than that , everything was great. The staff, the food, & the property itself. Thank you."

Ethereal White Resort Hotel & Spa - Adults Only

8/10 Good

"Everything was great except for the shower. No walls, just a shower head in the corner of the bathroom. Water got everywhere, the floor became quite slippery."

Sofia Hotel

10/10 Excellent

"Rooms were clean. Has pool to use. Has parking for guests."

Galaxy Hotel Iraklio

10/10 Excellent

"Stayed one night and it was perfect!! Staff were helpful and only 15 min walk from the main areas which was great. We didn’t want to stay right in the hustle and bustle where it was loud. Breakfast was also really good. Had everything you wanted. If I go back to Heraklion I’d definitely stay there again. Parking included was a bonus."

More cheap stays in Ayios Thomas

Mirabello Hotel

20 Theotokopoulou St Heraklion Crete Island

€49

23 Oct - 24 Oct

includes taxes & fees

8.6/10 Excellent! (413 reviews)

Pela Mare Hotel

Agia Pelagia Malevizi Crete Island

€60

15 Oct - 16 Oct

includes taxes & fees

Thalia Bloom Villa Apartments

Marikas Kapsi Malevizi Heraklion

€67

2 Oct - 3 Oct

includes taxes & fees

9.6/10 Exceptional! (31 reviews)

El Greco Hotel

4, Street 1821 Heraklion Crete Island

€69

4 Oct - 5 Oct

includes taxes & fees

7.4/10 Good! (815 reviews)

Idi Hotel

Zaros Faistos Crete

€77

13 Oct - 14 Oct

includes taxes & fees

9.2/10 Wonderful! (87 reviews)

Kronos Hotel

2, Sof. Venizelou Str. and M. Agarathou Heraklion Crete Island

€80

31 Oct - 1 Nov

includes taxes & fees

8.8/10 Excellent! (651 reviews)

Frequently asked questions

Where is the best place to stay in Ayios Thomas?

Located 14.5 mi (23.4 km) from the heart of Ayios Thomas, Aquila Atlantis Hotel is a top choice for your stay, based on our traveller data. Two other choices for your visit to the area are Peninsula Resort & Spa - All Inclusive and Sofia Hotel. See all available top hotels, or vacation rentals in Ayios Thomas.

What are some of the best holiday rentals that Ayios Thomas has to offer?

4 Living by Semavi: This holiday home rental outside of Ayios Thomas is in the city centre, and equipped with air conditioning and free WiFi to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a stovetop, a microwave and kitchenware. See all vacation rentals in Ayios Thomas.

If I need to cancel my hotel reservation in Ayios Thomas, will I receive a refund?

Yes! The majority of room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your scheduled arrival. If you have a reservation that's non-refundable, you might be able to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Ayios Thomas.

What's it like staying in Ayios Thomas?

Visitors will definitely enjoy all that Ayios Thomas has to offer. A top sight in the area is Heraklion Port. There are 2823 hotels and other accommodation options in the surrounding area. Find out more about Ayios Thomas.

What should I do while I'm visiting Ayios Thomas?

Heraklion Port is a notable place to visit in the area. You'll also find Knossos Archaeological Site and Palace of Knossos in the area. Take a look at what more there is to see and do in Expedia's Ayios Thomas guide.

What's the seasonal weather in Ayios Thomas?

The hottest months are usually July and August, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Ayios Thomas is 351 mm.

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Ayios Thomas Hotels

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Ayios Thomas

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Ayios Thomas hotels

1. Idi Hotel

2. Traditional Cretan Houses

3. Manili Boutique Suites & Villas, an SLH Hotel

4. Chapter 02 Gallery Suites

5. Arolithos Traditional Cretan Village

6. Stay 365 Heraklion Apart Hotel

7. Sofia Hotel

8. Marvel Deluxe Rooms

9. Karteros Hotel

10. Nuovo Crete By Sea - Adults Only

11. Asterion Hotel

12. Yianna Caravel Suites "by Checkin" adults only

13. Sun Boutique Hotel - Adults Only

14. Nesean Plaza Hotel

15. Atrion Hotel

16. Kronos Hotel

17. Galaxy Hotel Iraklio

18. Petousis Hotel & Suites

19. Captain Napoleon Paterakis CNP Luxurious Suites

20. Apollonia Beach Resort & Spa

Top Ayios Thomas Hotel Reviews

Lato Boutique Hotel

Aquila Atlantis Hotel

Peninsula Resort & Spa - All Inclusive

Mirabello Hotel

GDM Megaron Historical Monument Hotel

Artion City Boutique Hotel

Ethereal White Resort Hotel & Spa - Adults Only

Sofia Hotel

Galaxy Hotel Iraklio

More cheap stays in Ayios Thomas

Mirabello Hotel

Pela Mare Hotel

Thalia Bloom Villa Apartments

El Greco Hotel

Idi Hotel

Kronos Hotel

Frequently asked questions

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