Ayios Thomas Hotels

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Check prices for these dates

Tonight
31 Dec - 1 Jan
Tomorrow
1 Jan - 2 Jan
This weekend
2 Jan - 4 Jan
Next weekend
9 Jan - 11 Jan

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Our top choices for Ayios Thomas hotels

Flat-screen TV
Porta Medina Boutique Hotel - Adults Only

Porta Medina Boutique Hotel - Adults Only

Porta Medina Boutique Hotel - Adults Only
Heraklion
9.4 out of 10, Exceptional, (82)
"Small boutique hotel in walking distance to restaurants and attractions, beautiful old building remodeled very nicely keeping the original feeling."
United States
Janice
Porta Medina Boutique Hotel - Adults Only
Daily buffet breakfast (EUR 10 per person)
Sofia Hotel

Sofia Hotel

Sofia Hotel
3.0 star property
Nea Alikarnassos
8.4 out of 10, Very good, (943)
"Friendly staff "
United Kingdom
Francisco
The price is €60
includes taxes & fees
3 Jan - 4 Jan 2026
Sofia Hotel
Outdoor pool
Aquila Atlantis Hotel

Aquila Atlantis Hotel

Aquila Atlantis Hotel
5.0 star property
Heraklion
9.0 out of 10, Wonderful, (1002)
"Room was clean, breakfast was excellent!!!"
United States
Carla Joan
The price is €92
includes taxes & fees
18 Jan - 19 Jan 2026
Aquila Atlantis Hotel
Breakfast, lunch and dinner served
Lato Boutique Hotel

Lato Boutique Hotel

Lato Boutique Hotel
4.0 star property
Heraklion
8.8 out of 10, Excellent, (1001)
"Our 5th time staying here…always great!!! Location, service and facilities are great"
United States
Richard
The price is €68
includes taxes & fees
9 Jan - 10 Jan 2026
Lato Boutique Hotel
Seasonal outdoor pool, open 8:00 AM to 7:00 PM, pool umbrellas
GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel
5.0 star property
Heraklion
9.8 out of 10, Exceptional, (1000)
"Lovely room and views. Helpful staff. Clean throughout."
United States
Randy
The price is €108
includes taxes & fees
4 Jan - 5 Jan 2026
GDM Megaron Historical Monument Hotel
Exterior
Delina Mountain Resort

Delina Mountain Resort

Delina Mountain Resort
4.0 star property
Anogia
8.6 out of 10, Excellent, (52)
"Everything about this place is fantastic - The people, the food, the views, the rooms all incredible. "
United Kingdom
Rian
The price is €142
includes taxes & fees
25 Jan - 26 Jan 2026
Delina Mountain Resort
Terrace/patio
Marvel Deluxe Rooms

Marvel Deluxe Rooms

Marvel Deluxe Rooms
Nea Alikarnassos
9.2 out of 10, Wonderful, (188)
"Excellent stay"
United Kingdom
Trevor
The price is €54
includes taxes & fees
7 Jan - 8 Jan 2026
Marvel Deluxe Rooms
Coffee shop
Chapter 02 Gallery Suites

Chapter 02 Gallery Suites

Chapter 02 Gallery Suites
Heraklion
9.2 out of 10, Wonderful, (74)
"Great place to spend a night!"
United States
Peter
The price is €97
includes taxes & fees
1 Jan - 2 Jan 2026
Chapter 02 Gallery Suites
Junior Suite - Dorippi
Inotropes Boutique Suites - Adults Only

Inotropes Boutique Suites - Adults Only

Inotropes Boutique Suites - Adults Only
Archanes-Asterousia
9.6 out of 10, Exceptional, (28)
"An amazing clean apartment with all the necessary features, and easy parking. A lovely place to stay in summer or winter. Highly recommended. "
United Kingdom
Yiannis
The price is €68
includes taxes & fees
8 Jan - 9 Jan 2026
Inotropes Boutique Suites - Adults Only
Boating
Olive Green Hotel

Olive Green Hotel

Olive Green Hotel
4.0 star property
Heraklion
9.4 out of 10, Exceptional, (499)
"Nice room, great breakfast, attentive staff, very good location"
United States
Lea
The price is €75
includes taxes & fees
30 Jan - 31 Jan 2026
Olive Green Hotel
Junior Suite, 1 Bedroom, Balcony (B2)
Candia Suites & Rooms

Candia Suites & Rooms

Candia Suites & Rooms
Heraklion
8.0 out of 10, Very good, (47)
"Great central location. Lovely welcome. Spacious. Ideal for a 2 night stay. "
United Kingdom
Debra
The price is €46
includes taxes & fees
23 Jan - 24 Jan 2026
Candia Suites & Rooms
Deluxe Room, 1 Double or 2 Single Beds
Ibis Styles Heraklion Central

Ibis Styles Heraklion Central

Ibis Styles Heraklion Central
4.0 star property
Heraklion
9.4 out of 10, Exceptional, (549)
"Our room was amazing. Loved the unique use of space! Breakfast was huge and had a great selection. Staff was very helpful. Loved the discounted parking under the hotel. Quick walk to wonderful shops, great little restaurants, and the coast. "
United States
Meghan
The price is €83
includes taxes & fees
4 Jan - 5 Jan 2026
Ibis Styles Heraklion Central
Terrace/patio
LAVRIS City Suites

LAVRIS City Suites

LAVRIS City Suites
Heraklion
9.6 out of 10, Exceptional, (168)
"It is a very modern hotel with friendly and knowledgeable staff. "
United States
Abolfazl
LAVRIS City Suites
Executive Suite, Sea View | View from room
Atrion Hotel

Atrion Hotel

Atrion Hotel
3.0 star property
Heraklion
9.0 out of 10, Wonderful, (852)
"Great place"
United States
Ibraheem
The price is €73
includes taxes & fees
1 Jan - 2 Jan 2026
Atrion Hotel
Coffee service
Marin Hotel

Marin Hotel

Marin Hotel
3.0 star property
Heraklion
8.2 out of 10, Very good, (934)
"hotel was good and workers"
Canada
Ather
The price is €71
includes taxes & fees
10 Jan - 11 Jan 2026
Marin Hotel
Seasonal outdoor pool, open 8:00 AM to 8:00 PM, pool loungers
Petronikolis Traditional House

Petronikolis Traditional House

Petronikolis Traditional House
Archanes-Asterousia
8.8 out of 10, Excellent, (34)
"The old couple who run the place are awesome. Highly recommend staying here for couple of nights to enjoy village experience in Crete"
United Kingdom
Vivek
Petronikolis Traditional House
Minibar, in-room safe, iron/ironing board, free WiFi
Manili Boutique Suites & Villas

Manili Boutique Suites & Villas

Manili Boutique Suites & Villas
5.0 star property
Archanes-Asterousia
9.6 out of 10, Exceptional, (27)
"Exceptional accommodations in a truly destination village. Great staff, pools everywhere and architecturally a treat! "
United States
David
The price is €131
includes taxes & fees
14 Jan - 15 Jan 2026
Manili Boutique Suites & Villas
Deluxe Suite
Artree Suites

Artree Suites

Artree Suites
Heraklion
9.6 out of 10, Exceptional, (233)
"Good place for staying to catch the ferry the next day "
Canada
Shafeena
Artree Suites
Deluxe Room with Balcony and City View | View from room
Metropole Urban Hotel

Metropole Urban Hotel

Metropole Urban Hotel
4.0 star property
Heraklion
9.2 out of 10, Wonderful, (281)
"Nice hotel"
Canada
Penny
The price is €75
includes taxes & fees
1 Jan - 2 Jan 2026
Metropole Urban Hotel
Beach nearby, sun-loungers, beach umbrellas
Triton Authentic Cretan Hotel

Triton Authentic Cretan Hotel

Triton Authentic Cretan Hotel
4.0 star property
Minoa Pediada
8.6 out of 10, Excellent, (9)
"Wir kommen gerne wieder "
Germany
Manuela
The price is €96
includes taxes & fees
1 Jan - 2 Jan 2026
Triton Authentic Cretan Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Ayios Thomas Hotel Reviews

Sofia Hotel

Sofia Hotel

10/10 Excellent
"Friendly staff "
Francisco 1-night trip
Posted 7 days ago
Sofia Hotel

More cheap stays in Ayios Thomas

El Greco Hotel

El Greco Hotel

4, Street 1821 Heraklion Crete Island
The price is €55 per night from 5 Jan to 6 Jan
€55
5 Jan - 6 Jan 2026
includes taxes & fees
7.2/10 Good! (776 reviews)

Frequently asked questions

Where is the best place to stay in Ayios Thomas?
Located 14.5 mi (23.4 km) from the heart of Ayios Thomas, Aquila Atlantis Hotel is a top choice for your stay, based on our traveller data. Two other choices for your visit to the area are Agapi Beach Resort - Premium All Inclusive and GDM Megaron Historical Monument Hotel. See all available top hotels, or vacation rentals in Ayios Thomas.
What are some of the best holiday rentals that Ayios Thomas has to offer?
A house by the sea.: This holiday home rental outside of Ayios Thomas is near the beach, and equipped with air conditioning and WiFi to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop and a coffee maker. See all vacation rentals in Ayios Thomas.
If I need to cancel my hotel reservation in Ayios Thomas, will I receive a refund?
Yes! The majority of room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your scheduled arrival. If you have a reservation that's non-refundable, you might be able to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Ayios Thomas.
What's it like staying in Ayios Thomas?
Visitors will definitely enjoy all that Ayios Thomas has to offer. A top sight in the area is Heraklion Port. There are 2669 hotels and other accommodation options in the surrounding area. Find out more about Ayios Thomas.
What should I do while I'm visiting Ayios Thomas?
Heraklion Port is a notable place to visit in the area. You'll also find Shrine at Anemospilia and Knossos Archaeological Site in the area. Take a look at what more there is to see and do in Expedia's Ayios Thomas guide.
What's the seasonal weather in Ayios Thomas?
The hottest months are usually July and August, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Ayios Thomas is 351 mm.

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