Cheap Flights from Heraklion to Santorini

View €50 flight on Sat, 1 Nov 2025Opens in a new window

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Cheap flights from Heraklion to Santorini (HER-JTR)

Prices were available within the past 7 days and start at €50 for one-way flights and €156 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Aegean
Thu, 2 Oct - Mon, 6 Oct
HER
Heraklion
JTR
Santorini
€156 Return, found 7 hours ago
€156
Return
found 7 hours ago
Select Aegean flight, departing Thu, 2 Oct from Heraklion to Santorini, returning Mon, 6 Oct, priced at €156 found 7 hours ago
Aegean
Thu, 25 Sep - Mon, 29 Sep
HER
Heraklion
JTR
Santorini
€165 Return, found 4 days ago
€165
Return
found 4 days ago
Select Aegean flight, departing Thu, 25 Sep from Heraklion to Santorini, returning Mon, 29 Sep, priced at €165 found 4 days ago
Aegean
Thu, 2 Oct - Mon, 6 Oct
HER
Heraklion
JTR
Santorini
€168 Return, found 7 hours ago
€168
Return
found 7 hours ago
Select Aegean flight, departing Thu, 2 Oct from Heraklion to Santorini, returning Mon, 6 Oct, priced at €168 found 7 hours ago
SKY express
Thu, 25 Sep - Mon, 29 Sep
HER
Heraklion
JTR
Santorini
€173 Return, found 4 days ago
€173
Return
found 4 days ago
Select SKY express flight, departing Thu, 25 Sep from Heraklion to Santorini, returning Mon, 29 Sep, priced at €173 found 4 days ago
Aegean
Thu, 2 Oct - Mon, 6 Oct
HER
Heraklion
JTR
Santorini
€175 Return, found 7 hours ago
€175
Return
found 7 hours ago
Select Aegean flight, departing Thu, 2 Oct from Heraklion to Santorini, returning Mon, 6 Oct, priced at €175 found 7 hours ago
SKY express
Thu, 2 Oct - Mon, 6 Oct
HER
Heraklion
JTR
Santorini
€177 Return, found 7 hours ago
€177
Return
found 7 hours ago
Select SKY express flight, departing Thu, 2 Oct from Heraklion to Santorini, returning Mon, 6 Oct, priced at €177 found 7 hours ago

Find the cheapest month to fly from Heraklion (HER) to Santorini (JTR)

May is typically the cheapest month to fly

From €99 - €185 per traveller.

Graph displaying average flight prices per month

*Available to Expedia members.