Isahaya Hotels from €35 - Fully Refundable Options

An aerial view of a rural landscape with fields, a small town, and distant mountains.

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Go beyond your typical stay in Isahaya

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Our top choices for Isahaya hotels

A multi-story building with a flat facade, balconies, and a parking lot in front.

A spacious room with a ping pong table, two hanging chairs, and patterned carpet.

A spacious lobby with a reception desk, leather seating area, and ping pong tables.

A room with two ping pong tables, a red chair, and exercise bikes.

1. Tennen Onsen Hotel Kinshai

Isahaya

HIROKI

€55

24 Sept - 25 Sept

A hotel room with a bed, a desk, a chair, a window with a city view, and a wall-mounted TV.

A reception desk with a computer, a plant, and a cash register.

A store with shelves of folded clothing and a map on the wall.

A laundry facility with four washing machines and four dryers, each labeled with a number.

2. Super Hotel Nagasaki Isahaya Natural Hot Spring

Isahaya

KITANO

€70

12 Oct - 13 Oct

A view through a window with a view of a garden with various trees and bushes.

A chef performing a flambé with fire on a table.

A modern lobby with seating areas, a bar, and a bookshelf.

A modern hotel lobby with a mix of seating areas, including sofas and tables, and a view of a garden through large windows.

3. Hotel Flags Ishihaya Nagasaki

Isahaya

cat

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

An outdoor deck with wicker furniture, a wooden table, and umbrellas.

A modern hotel room with a brown velvet sofa, a small coffee table, a flat-screen TV, and a kitchenette area with wooden cabinets and a microwave.

4. Morino Villa & Resort

Isahaya

Maximo

A modern building entrance with a set of stairs leading to a glass door entrance.

A modern hotel lobby with wooden tables and chairs, a reception desk, and a view of the city through large windows.

A hotel room with a sofa, two beds, a TV, and a window with curtains.

A reception area with a wooden reception desk, a seating area with a sofa, and a bookshelf.

5. Isahaya Terminal Hotel

Isahaya

koujirou

€64

24 Sept - 25 Sept

A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

A hotel room with two beds, a desk with a computer, a chair, a television, and a window with curtains.

A meal in a compartmentalized container with rice, macaroni, vegetables, and fried items.

A multi-story hotel with a modern design, featuring a flat facade and numerous windows.

6. New Station Hotel

Isahaya

Kenji

€56

29 Sept - 30 Sept

A hotel lobby with a reception desk, seating area, and large windows.

A buffet line with various food items and condiments.

A hotel room with two beds, a desk, a chair, an air conditioning unit, and a painting on the wall.

7. Hotel Route-Inn Isahaya Inter

Isahaya

?????

€82

24 Sept - 25 Sept

A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

A multi-story hotel with a modern design, featuring a prominent entrance and multiple balconies.

A bento box with rice, macaroni, vegetables, and fried items.

A hotel room with a bed, a desk with a computer, a chair, and a window with curtains.

8. New Station Hotel Premiere

Isahaya

James

A modern multi-story building with a parking lot in front.

A balcony with a view of a cityscape, including a body of water and mountains.

A modern bathroom with multiple sinks, mirrors, and hand dryers.

A reception desk at KIKITSU STATION HOTEL with a digital clock, a phone, and a pen holder.

9. KIKITSU Station Hotel

Isahaya

Barb

€53

24 Sept - 25 Sept

A modern reception area with a glass partition, a reception desk, seating area, and large windows.

A modern multi-story building with balconies, large windows, and a flat roof.

A buffet setup with various food items, a white tablecloth-covered table, and a modern interior with large windows and ceiling lights.

A modern bathroom with a bathtub, a sink, and a toilet.

10. Omura Station Hotel Nagasaki Airport

Omura

€51

24 Sept - 25 Sept

A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

A laundry facility with multiple washing machines and dryers, each with instructional posters on the wall.

A reception area with an orange counter, white walls, and a wooden floor.

A modern, well-lit dining area with long tables and chairs, a kitchen in the background, and large windows offering a view of greenery outside.

11. Comfort Inn Nagasaki Airport

Omura

Asya

€44

27 Sept - 28 Sept

A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

A hotel room with a bed, a desk with a lamp, a television, and an air conditioning unit.

A modern dining area with multiple tables and chairs, recessed ceiling lighting, and large windows.

12. Omura Station Hotel

Omura

Yasuhiko

€63

24 Sept - 25 Sept

A clear indoor pool with a water fountain feature, surrounded by dark stone walls and a wooden ceiling.

A hotel room with two beds, beige walls, a painting of flowers, and a window.

A view through a window with bamboo plants and a concrete wall.

A view of a coastal cityscape with a prominent building and a parking lot.

13. Jisco Hotel Obama Onsen

Obama Onsen

Alexander

A hotel room with a bed, a desk with a computer, a television, and a microwave.

A compact hotel structure with a sign indicating 'Hotel R9 The Yard' and '19 Hotels Group'.

A parking lot with several train carriages and a red sign for 'HOTEL R9 The Yard'.

A row of white front-loading washing machines with baskets on top, lined up against a wall with a wooden floor.

14. HOTEL R9 The Yard Omura

Omura

Tsz Kin

€35

27 Sept - 28 Sept

The entrance to Omura Central Hotel with a glass facade, a red carpet, and bicycles parked outside.

A hotel room with a bed, bedside lamps, a TV, a desk, and a mini-fridge.

A multi-story building with balconies, a parking lot, and a view of a cityscape with mountains in the distance.

A Japanese-style building with a garden.

15. Omura Central Hotel

Omura

Jan

€80

27 Sept - 28 Sept

A dining table set with breakfast items, a vase of flowers, and a view of a city and mountains.

A spacious lobby with a central seating area, a bookshelf, and a dining area in the background.

A traditional Japanese tatami room with a low table, cushions, and sliding doors.

A multi-story hotel with a flat roof, surrounded by dense greenery and hills in the background.

16. Luke Plaza Hotel

Nagasaki

Kiyonobu

€61

24 Sept - 25 Sept

A traditional Japanese room with tatami flooring, a low table with cushions, a television on a cabinet, and a view of greenery outside.

A multi-story hotel with a central courtyard, a parking area, and a clear blue sky.

A hotel reception desk with a 'CASHIER' and 'RECEPTION' sign, a computer, and a telephone.

A hotel room with a wooden desk, a television, a microwave, a trash bin, and a chair.

17. HOTEL LiVEMAX Nagasaki Airport

Omura

Gregory

€47

29 Sept - 30 Sept

A buffet with a variety of food items, a seating area with chairs, and a view of the city through large windows.

A spacious lobby with a polished marble floor, a central seating area, and a high ceiling with recessed lighting.

A multi-story hotel with a prominent vertical light feature on the facade, surrounded by trees and streetlights.

A traditional Japanese-style room with two beds, a wooden chair, a small table, and a large window with a view.

18. THE GLOBAL VIEW Nagasaki

Nagasaki

Chris

€49

27 Sept - 28 Sept

A modern bathroom with a freestanding bathtub, a view of a cityscape, and a wooden interior.

A modern restaurant with a view of a cityscape at night.

A swimming pool with a city view at night.

A hotel room with a large window offering a city view at night.

19. Inasayama Kanko Hotel

Nagasaki

Yuka

€55

26 Sept - 27 Sept

A modern hotel room with large windows offering a city view, a small table, wicker chairs, and a television.

A modern reception area with a wooden reception desk, multiple seating options, and a city view through large windows.

A modern indoor pool area with a glass wall, seating, and wall-mounted lighting.

A cozy indoor seating area with a central fire feature, surrounded by tables and chairs, and a visible bar area in the background.

20. Hotel H2 Nagasaki

Nagasaki

jennifer

€48

25 Sept - 26 Sept

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Stay near popular Isahaya attractions

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

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Todoroki Fall

6.0/10 (1 review)

This 12-meter waterfall creates a thunderous roar as it cascades into crystal-clear pools below. Explore the surrounding valley's lush trails, where 30 smaller falls create a tranquil forest symphony.

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Konagai Culture Hall

6.0/10 (2 reviews)

This community hub hosts local events and offers a welcoming library for quiet study. Look for the whimsical fruit-shaped bus stops nearby—they make for delightful photo opportunities.

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Kantaku no Sato

7.4/10 (3 reviews)

This educational complex showcases Isahaya Bay's reclamation history and marine life through its Kantaku Museum and Mutsugoro Aquarium. Enjoy horseback riding, boating, or a 100-meter zipline in the adventure park.

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Kannonji Temple

6.0/10 (1 review)

Kannonji Temple offers a serene retreat with traditional Buddhist architecture in Isahaya City, Nagasaki. Visit in early morning to experience the peaceful grounds and cultural artefacts in contemplative solitude.

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Sazanka Herb Museum

7.0/10 (2 reviews)

This fragrant highland garden showcases a diverse collection of aromatic herbs in a serene setting. Explore the grounds, join an aroma class, or savour herbal teas at the garden café after your botanical journey.

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Moriyama Folk Museum

8.0/10 (2 reviews)

Learn about the local history of Isahaya when you spend time at Moriyama Folk Museum. Discover the area's mountain views and monuments.

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Ikoinomori Takaki

Escape to Ikoinomori Takaki, a serene park where locals unwind among lush greenery in Isahaya. Bring a picnic to enjoy under the trees during spring when the natural scenery is most captivating.

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Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialities.

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A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

THE GLOBAL VIEW Nagasaki

10/10 Excellent

"Very nice would stay here again."

Dormy Inn Nagasakiekimae Hot Springs

10/10 Excellent

"My BFF and I went to explore Nagasaki Dormy never disappoints This is a premiere and we really enjoyed it…not sure of isffeeence The location was good We saw the one in Chinatown It looked similar? The room was good size for Japan Onsen was clean and excellent The breakfast was delish Love the little touches: like ice cream next to onsen A book library with a nice view and massage chairs before or after onsen! And location was central to everything we wanted to visit Bus stop, train station and trolley stop all in walking distance 7-11 attached to hotel which was convenient Staff was polite and friendly Not a lot of English but accommodating We miss it cuz it was so nice to go back to a comfy hotel at end of day and soak in Onsen!"

Belleview Nagasaki Dejima

10/10 Excellent

"A very friendly and wel ome staff and front desk with management care and hospitality. Lool.forward to future booking in a tranquility and peaceful hotel"

Nagasaki Marriott Hotel

10/10 Excellent

"Very modern, spacious, and clean, conveniently located next to Nagasaki Station"

FAV LUX NAGASAKI

10/10 Excellent

"This hotel is clean,modern and very comfortable. It made my visit to Nagasaki even better. Its close to a tram stop to access all main attractions and about 200M to Glover garden. Highly recommended"

Hotel Nikko Huis Ten Bosch

8/10 Good

"Staff services"

Hotel Rotterdam Huis Ten Bosch

8/10 Good

"Breakfast was limited to 1 main choice and allowed one piece of meat, either mackerel , chicken or sausage. The bread was big so we should be allowed to take more proteins. It should not restricted to 1 piece. Other than that, hotel was in a good location nearby to Huis Ten Bosch."

Hotel Europe Huis Ten Bosch

10/10 Excellent

"とても良い気分で過ごすことができました。"

More cheap stays in Isahaya

HOTEL R9 The Yard Omura

Kuromarumachi 347-4 Omura Nagasaki

€35

27 Sept - 28 Sept

8.8/10 Excellent! (39 reviews)

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

€39

24 Sept - 25 Sept

5.4/10 (14 reviews)

Tennen Onsen Hotel Kinshai

22-12 Saiwaimachi Isahaya Nagasaki

€55

24 Sept - 25 Sept

8.2/10 Very good! (33 reviews)

Grand Base Nagasaki City

2 39 Tamazonomachi Nagasaki Nagasaki Prefecture

€59

30 Sept - 1 Oct

8.2/10 Very good! (126 reviews)

HOTEL URO - hostel

6-10 Kajiya-machi Nagasaki Nagasaki

€87

1 Oct - 2 Oct

9/10 Wonderful! (2 reviews)

Jisco Hotel Obama Onsen

Obamacho Minamihonmachi - 145-2 Unzen Nagasaki

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Frequently asked questions

What's the best place for a stay in Isahaya?

Based on our traveller data, New Station Hotel Premiere is one of the top choices for your stay. This hotel offers free parking and free WiFi. Tennen Onsen Hotel Kinshai is another good choice for your trip. See all available top hotels, or vacation rentals in Isahaya.

What are some of the best holiday rentals that Isahaya has to offer?

Rakuten STAY HOUSE x WILLSTYLE SASEBO: This holiday home rental outside of Isahaya has air conditioning and laundry facilities to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop and a microwave. See all vacation rentals in Isahaya.

If I need to cancel my hotel reservation in Isahaya, will I receive a refund?

Yes! Most room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Isahaya.

What are some accommodation options with pools in Isahaya?

STADIUM CITY HOTEL NAGASAKI: Provides a children's pool, an indoor pool and 5 restaurants. View all hotels with pools in Isahaya.

What is the best spa hotel in Isahaya?

Super Hotel Nagasaki Isahaya Natural Hot Spring is a top spa hotel with 152 rooms, free WiFi and off-street parking. Treat yourself to the hot springs at the on-site spa. See all spa hotels in Isahaya.

What's it like staying in Isahaya?

Visitors can enjoy all that Isahaya has to offer, including the parks and monuments. In Isahaya, there are 19 hotels and other accommodation options to choose from. Find out more about Isahaya.

What is there to see in Isahaya?

Landmarks like Isahaya Park, Kannonji Temple and Kantaku no Sato might be worth a visit. Natural beauty is on display at Todoroki Fall, Tsukinooka Park and Ikoinomori Takaki. A couple of additional sights to add to your itinerary are Konagai Culture Hall and Megane Bridge. Take a look at what more there is to see and do in Expedia's Isahaya guide.

What's the seasonal weather like in Isahaya?

The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 9°C. The rainiest months in Isahaya are June, July, August and May, with each month seeing an average of 382 mm of rainfall.

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Flights to Nagasaki

Nagasaki Holiday Rentals

Things to do in Nagasaki

Isahaya Hotels

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Isahaya hotels

1. Tennen Onsen Hotel Kinshai

2. Super Hotel Nagasaki Isahaya Natural Hot Spring

3. Hotel Flags Ishihaya Nagasaki

4. Morino Villa & Resort

5. Isahaya Terminal Hotel

6. New Station Hotel

7. Hotel Route-Inn Isahaya Inter

8. New Station Hotel Premiere

9. KIKITSU Station Hotel

10. Omura Station Hotel Nagasaki Airport

11. Comfort Inn Nagasaki Airport

12. Omura Station Hotel

13. Jisco Hotel Obama Onsen

14. HOTEL R9 The Yard Omura

15. Omura Central Hotel

16. Luke Plaza Hotel

17. HOTEL LiVEMAX Nagasaki Airport

18. THE GLOBAL VIEW Nagasaki

19. Inasayama Kanko Hotel

20. Hotel H2 Nagasaki

Stay near popular Isahaya attractions

Isahaya Park

Todoroki Fall

Konagai Culture Hall

Kantaku no Sato

Kannonji Temple

Sazanka Herb Museum

Moriyama Folk Museum

Ikoinomori Takaki

Learn more about Isahaya

Top Isahaya Hotel Reviews

THE GLOBAL VIEW Nagasaki

Dormy Inn Nagasakiekimae Hot Springs

Belleview Nagasaki Dejima

Nagasaki Marriott Hotel

FAV LUX NAGASAKI

Hotel Nikko Huis Ten Bosch

Hotel Rotterdam Huis Ten Bosch

Hotel Europe Huis Ten Bosch

More cheap stays in Isahaya

HOTEL R9 The Yard Omura

Hotel 21

Tennen Onsen Hotel Kinshai

Grand Base Nagasaki City

HOTEL URO - hostel

Jisco Hotel Obama Onsen

Frequently asked questions

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