Hotels closest to Shelter Island in San Diego

A large abstract sculpture with a spiral base in a park.

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Our top choices for Shelter Island hotels

A balcony with a table set for two, overlooking a marina with numerous boats.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

1. Bay Club Hotel & Marina

0.7 km from Shelter Island

Jennifer

€166

includes taxes & fees

29 Sept - 30 Sept

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

A beach with sand dunes and a person walking.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

€196

includes taxes & fees

29 Sept - 30 Sept

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

3. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

Ana Lopez

€190

includes taxes & fees

30 Sept - 1 Oct

A resort with two-story buildings, balconies, and a pool area.

A resort with a pool, palm trees, and a building with multiple balconies.

A canal lined with palm trees and a row of buildings with balconies.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

4. Humphreys Half Moon Inn

1 km from Shelter Island

Johnny

€207

includes taxes & fees

4 Oct - 5 Oct

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Michael

€158

includes taxes & fees

30 Sept - 1 Oct

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A marina with boats, a hotel with a white facade, and a city skyline in the background.

A marina with boats docked, a balcony with chairs, and a view of the marina.

6. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

€189

includes taxes & fees

4 Oct - 5 Oct

A building with a sign reading "the Pearl" and a modern architectural style.

A bathroom with a wooden bench, a mirror, shelves with toiletries, and a robe hanging on the wall.

A modern interior with a stone wall, leather sofa, and pendant lighting.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

7. The Pearl Hotel

1.6 km from Shelter Island

Tara

€154

includes taxes & fees

30 Sept - 1 Oct

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Catalina

€186

includes taxes & fees

27 Sept - 28 Sept

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

9. Sea Harbor Hotel

1.4 km from Shelter Island

Kassandra

€125

includes taxes & fees

27 Sept - 28 Sept

A square pizza on a wooden board with a fire pit in the background.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

A hotel with a well-maintained lawn, palm trees, and a pool area.

10. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Akosua

€155

includes taxes & fees

29 Sept - 30 Sept

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

11. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Arturo

€151

includes taxes & fees

12 Oct - 13 Oct

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

A multi-level interior with a staircase, black railings, and hanging lights.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

12. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

€105

includes taxes & fees

23 Sept - 24 Sept

A rooftop terrace with outdoor seating, a view of the marina, and a modern building with large windows.

A modern hotel with a curved facade, multiple balconies, and large windows.

A modern restaurant with a long wooden bar, black bar stools, and a mix of seating options including a bench and individual chairs.

A hotel room with two beds, a view of the city, a dining area, and a large window.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Alexa

€143

includes taxes & fees

28 Sept - 29 Sept

A marina with boats, a yacht, and a balcony with two chairs and a table.

A hotel with a Mediterranean architectural style, featuring a curved entrance, palm trees, and a well-lit driveway.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

14. Kona Kai San Diego

0.2 km from Shelter Island

Edward

€241

includes taxes & fees

14 Oct - 15 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

A rooftop patio with wicker furniture and palm trees, overlooking a marina.

15. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Robert

€103

includes taxes & fees

29 Sept - 30 Sept

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

16. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

€103

includes taxes & fees

28 Sept - 29 Sept

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A reception area with a wooden reception desk, a computer, and a chair.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

17. Hotel Point Loma

1.5 km from Shelter Island

Vannika

€97

includes taxes & fees

28 Sept - 29 Sept

A modern reception area with a wooden bench and a green hedge.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

18. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

€79

includes taxes & fees

23 Sept - 24 Sept

A couple walking hand in hand on a sandy beach with the ocean in the background.

A pathway flanked by lush tropical plants and a building with a large archway.

A narrow pathway flanked by buildings with large windows and a well-maintained garden.

A cozy living room with a fireplace, a sofa, a dining table, and a chair.

19. 1906 Lodge

5.9 km from Shelter Island

Bryan Huy

€282

includes taxes & fees

23 Oct - 24 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

linda

€59

includes taxes & fees

14 Oct - 15 Oct

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Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Bay Club Hotel & Marina	9.2 Wonderful 3,955 reviews	View
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,692 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,714 reviews	View
Humphreys Half Moon Inn	9.2 Wonderful 3,127 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,625 reviews	View

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

10/10 Excellent

"Room was clean, staff was helpful, lots of parking but not free, great AC"

Bay Club Hotel & Marina

8/10 Good

"I didn’t notice renovations other than the lobby. My king suite unit was great. Wall of slider windows & 2 separate decks created a panoramic view of the marina. Furniture needed cleaning. Towels were plush and clean; robe is appreciated. Six small worn pillows on a king bothered me, it wasn’t comfortable. More appropriate is 4 larger pillows. Shout out to Tiana at the front desk! She was affable, friendly and very helpfully attentive. Her attitude stood out from the rest. Alexis, restaurant manager, was exceptional in customer service. He was friendly and professional. Great asset and made my long stay at the hotel more enjoyable."

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

8/10 Good

"N/A"

Comfort Inn San Diego Airport At The Harbor

10/10 Excellent

"Nice and well located"

Best Western Plus Island Palms Hotel & Marina

8/10 Good

"Our bathroom was not in good shape. There was an odor that we couldn't distinguish what it was and the bathtub spout didn't close up all the way so the shower wasn't working properly. Everything else was fine"

Best Western Yacht Harbor Hotel

10/10 Excellent

"The property was clean and comfortable. Parking was very convenient and covered in the cost of the room. It's close to so many things on Point Loma. Easy to get around by car or Uber. My friends and I stayed for the Yacht Rock Festival at Liberty Station. I would stay there again."

Hotel Point Loma

8/10 Good

"Clean room, check in and check out was fast"

The Monsaraz San Diego, Tapestry Collection by Hilton

8/10 Good

"..."

Ramada by Wyndham San Diego Airport

8/10 Good

"It’s overall a decent stay. Feels dated and tired. The pool is clean. The rooms are small and quaint. The breakfast is limited no egg or sausage. The location is great close to the bay. Parking is tight for bigger vehicles. You get what you pay for."

Other attractions near Shelter Island

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.

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Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 39 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 39 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and Lyceum Theatre.

San Diego Hotel Guide - Shelter Island hotels in San Diego, United States of America.

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Treat yourself

Be picky

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Our top choices for Shelter Island hotels

1. Bay Club Hotel & Marina

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Humphreys Half Moon Inn

5. Best Western Plus Island Palms Hotel & Marina

6. Hilton San Diego Airport/Harbor Island

7. The Pearl Hotel

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

9. Sea Harbor Hotel

10. DoubleTree by Hilton San Diego Bayside

11. Best Western Yacht Harbor Hotel

12. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. Kona Kai San Diego

15. Comfort Inn San Diego Airport At The Harbor

16. Ramada by Wyndham San Diego Airport

17. Hotel Point Loma

18. Hotel Aqua Mar

19. 1906 Lodge

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

Bay Club Hotel & Marina

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Comfort Inn San Diego Airport At The Harbor

Best Western Plus Island Palms Hotel & Marina

Best Western Yacht Harbor Hotel

Hotel Point Loma

The Monsaraz San Diego, Tapestry Collection by Hilton

Ramada by Wyndham San Diego Airport

Other attractions near Shelter Island

Sunset Cliffs Natural Park

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions