Southeast Minnesota Hotels from €60 - Fully Refundable Options

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Go beyond your typical stay in Southeast Minnesota

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Our top choices for Southeast Minnesota hotels

A hotel reception desk with a wooden counter, a computer, and a vase with flowers.

A hotel room with a large bed, a view through a sliding glass door to an outdoor area, a nightstand with a lamp, and a wooden headboard.

A living room with stone walls, a fireplace, leather furniture, and a ceiling fan.

A hotel room with a large bed, a separate bathroom with a bathtub, and a skylight ceiling.

1. Baymont by Wyndham Kasson Rochester Area

Kasson

Lynnette

€62

includes taxes & fees

18 Oct - 19 Oct

A modern dining area with high tables, chairs, and pendant lighting.

A hotel room with two beds, a desk with a computer, a chair, and a window with a view.

A swimming pool with a tiled deck, sun loungers, and a lifeguard chair.

A multi-story hotel with a modern design, featuring a prominent entrance with a covered area and a parking lot in front.

2. Hampton Inn & Suites Rochester-North

Rochester

Mark

€105

includes taxes & fees

18 Oct - 19 Oct

A modern indoor patio with a fire feature, seating, and large windows.

A modern interior with a seating area, a bookshelf, and a window with a view of trees.

A modern hotel lobby with a large glass wall, a green wall mural, and a seating area with sofas and chairs.

A modern living room with a fireplace, large windows, and a flat-screen TV mounted on the wall.

3. EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kutzky Park

James

€137

includes taxes & fees

17 Oct - 18 Oct

An outdoor seating area with a fire feature, blue cushioned chairs, and a modern building with large windows in the background.

A modern bar area with seating and a counter.

A modern indoor pool area with lounge chairs and a pool.

A modern Hyatt House hotel with a prominent 'Hyatt House' sign, multiple floors, and a parking garage.

4. Hyatt House Rochester/Mayo Clinic Area

Downtown Rochester

Kitt

€121

includes taxes & fees

17 Oct - 18 Oct

A hotel room with a large bed, a desk with a chair, a window with a view of the outdoors, and two bedside lamps.

A modern living room with a sofa, two armchairs, a coffee table, and a large window offering a view of the outdoors.

A gym with treadmills, elliptical machines, and a stationary bike.

A laundry area with two Whirlpool washers and a dryer, a wooden shelf above, and a white ceiling.

5. Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

Phil

€83

includes taxes & fees

10 Nov - 11 Nov

A spacious outdoor dining area with modern furniture and large windows offering views of the city.

A modern interior with a wooden ceiling, a large black shelving unit, and a refrigerator stocked with beverages.

An outdoor dining area with wooden beams, tables, and chairs.

A modern hotel room with a large bed, a sofa, a small table, a desk, and a wardrobe.

6. Hotel Indigo Rochester – Mayo Clinic Area by IHG

Downtown Rochester

thomas

€110

includes taxes & fees

24 Oct - 25 Oct

A hotel room with a desk, chairs, a television, a lamp, a mirror, and a bed.

A hotel room with a flat-screen TV mounted on the wall, a desk with a lamp, a chair, and a small kitchenette area.

A conference room with multiple tables and chairs, a flat-screen TV mounted on the wall, and a framed picture of a lake.

A hotel lobby with a reception desk, seating area, and a kitchenette.

7. Villa inn

Owatonna

Brandon

€53

includes taxes & fees

12 Oct - 13 Oct

A self-service breakfast station with a waffle maker, coffee machines, and a variety of condiments.

A reception area with a wooden reception desk, a red doormat, and framed awards on the wall.

A compact laundry area with a washing machine, dryer, and a water fountain.

A hotel room with a large bed, a desk, a chair, a television, and a window with curtains.

8. Econo Lodge Mayo Clinic Area

Rochester

Ashley

€68

includes taxes & fees

1 Nov - 2 Nov

An indoor swimming pool with a curved design, surrounded by palm trees and a white pool ladder.

A modern hotel lobby with a reception desk, a digital information kiosk, and a patterned floor.

A modern hotel with a prominent neon sign, multiple floors, and a well-maintained lawn area.

A modern interior with a fireplace, a green armchair, and a patterned rug.

9. Treasure Island Resort & Casino

Welch

Bill

€108

includes taxes & fees

12 Oct - 13 Oct

A modern hotel lobby with multiple seating areas, including a central dining table with chairs, a bar area, and a seating section with cushioned chairs.

A hotel reception desk with a modern design, a clock, and a digital screen.

A modern lounge area with a curved sofa, a round table, and a seating area with chairs.

A modern hotel room with a large bed, two bedside tables, and built-in lighting.

10. SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

Kutzky Park

Jackie

€105

includes taxes & fees

17 Oct - 18 Oct

An outdoor patio area with a concrete floor, wooden fence, and string lights.

A breakfast bar with a wooden counter, a coffee machine, and a refrigerator.

A modern living room with a stone fireplace, a blue armchair, a round coffee table, and a large window offering a view of the outdoors.

11. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

Kutzky Park

Jon

€115

includes taxes & fees

17 Oct - 18 Oct

A restaurant with wooden tables and bar stools, a bar area with a counter, and multiple televisions mounted on the walls.

An indoor swimming pool with a slide, seating area, and a large frog statue.

A bar with wooden stools and a neon sign.

A hotel room with two beds, a desk, a chair, and a mirror.

12. AmericInn by Wyndham Rochester Near Mayo Clinic

Rochester

blake

€75

includes taxes & fees

25 Oct - 26 Oct

A modern hotel lobby with a reception desk, seating area, and a kitchenette.

A modern hotel lobby with a reception desk, seating area, and a large window providing natural light.

A hotel room with a large bed, a desk, a chair, and a kitchenette.

A hotel with a covered entrance, multiple floors, and a parking lot.

13. Spark by Hilton Rochester South

Rochester

Stanton

€87

includes taxes & fees

8 Nov - 9 Nov

A spacious lobby with a reception desk, sofas, and a coffee table.

An indoor swimming pool with clear blue water, surrounded by tiled flooring and equipped with a pool ladder.

A hotel room with a large bed, a sofa, a TV, and a desk.

A Sleep Inn hotel with a covered entrance, stone pillars, and a clear blue sky.

14. Sleep Inn & Suites West-Near Medical Center

Rochester

Jacqueline

€85

includes taxes & fees

8 Nov - 9 Nov

An indoor swimming pool with a dolphin sculpture, wooden ceiling, and clear windows.

A hotel room with a flat-screen TV, a sofa with a red pillow, a small table, and a lamp.

A hotel room with a large bed, two bedside tables with lamps, a telephone, and a window with sheer curtains.

A hotel reception area with a red 'Hello' sign, a reception desk, a coffee station, and a fireplace.

15. TownePlace Suites by Marriott Rochester

Rochester

Terry

€101

includes taxes & fees

24 Oct - 25 Oct

A reception desk with a wooden finish, a glass partition, and a blue wall with climbing plants.

A staircase with patterned carpet and wooden handrails leading to a door marked with the number 201.

A hotel room with two beds, each with white linens and patterned bedspreads. There are bedside tables with lamps, a desk with a chair, and a wall-mounted TV.

A hotel with a parking lot, a yellow food truck, and several cars parked.

16. America's Stay Inn Stewartville

Stewartville

Robert

€63

includes taxes & fees

8 Nov - 9 Nov

A modern restaurant with a central counter, seating area, and a clock on the wall.

A hotel with a parking lot, multiple vehicles, and a well-maintained lawn.

A hotel room with three beds, a desk, and a patterned carpet.

A reception area with a stone wall, a flat-screen TV, a clock, and a seating area with patterned chairs.

17. Best Western Plus Albert Lea I-90/I-35 Hotel

Albert Lea

Michele

€83

includes taxes & fees

18 Oct - 19 Oct

A hotel room with a large bed, a desk, a chair, a TV, and a window with curtains.

A hotel room with a large window, a clock, a framed picture of pottery, a desk with a computer, and a seating area with patterned chairs.

A reception area with a reception desk, two armchairs, a clock, and a framed artwork on the wall.

A compact hotel room with a kitchenette, a dining area, a sofa, and a bed.

18. Microtel Inn & Suites by Wyndham Rochester North Mayo Clinic

Rochester

John

€72

includes taxes & fees

1 Nov - 2 Nov

A coffee station with a coffee machine and dispensers of creamer and sugar.

A vending machine with snacks and a Coca-Cola advertisement, a washing machine, and a dryer in a room with tiled flooring and white walls.

A room with a wooden desk, a television, a mirror, and a chair.

A multi-story hotel with a flat roof and a sign indicating it is an Ameris Best Value Inn.

19. Americas Best Value Inn Zumbrota

Zumbrota

Alnora

€57

includes taxes & fees

12 Oct - 13 Oct

A Comfort Inn hotel with a stone facade, a covered entrance, and a parking area.

A hotel room with a blue sofa, a wooden coffee table, a bed with white linens, a TV, and a large mirror.

A spacious living room with a stone fireplace, blue sofas, and a flat-screen TV.

A modern dining area with wooden tables and chairs, a kitchen with granite countertops, and a view of the outdoors through large windows.

20. Comfort Inn & Suites West - Medical Center

Rochester

yuan

€92

includes taxes & fees

1 Nov - 2 Nov

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Holiday Rentals in Southeast Minnesota

Aparthotel

A spacious living area with a modern staircase, leather sofas, and contemporary lighting.

A modern pool table in a spacious, well-lit room with large windows and a bar area.

A rooftop pool area with lounge chairs and umbrellas, surrounded by a modern building with a brick facade.

A modern interior with a large dining table, sofas, and a kitchen area.

The Berkman

Folwell

"Excellent service and wonderful room!"

Apartment

A bedroom with a large bed, a TV on a dresser, and a view of the city through large windows.

An indoor swimming pool with a clock on the wall, lounge chairs, and a lifeguard warning sign.

A multi-story building with the sign 'Broadway Plaza' indicating a commercial or hotel property.

Broadway Plaza, Trademark Collection by Wyndham

Downtown Rochester

"The staff were friendly and very helpful when we had questions. The kitchen was well equipped and clean. The parking was handy and lived the Skywalks."

Apartment

A two-story building with a green exterior, a covered porch, and a driveway leading to a garage.

A room with a large window, a flat-screen TV mounted on the wall, a fluffy chair, a small round table, and a chair with a basket.

A modern kitchen with stainless steel appliances, wooden cabinets, and a dishwasher.

A cozy room with a sofa bed, a small side table, and a window with blinds.

Downtown Northfield Apt: Winter Walk & Shops

Northfield

"It was amazing!"

Apartment

A modern kitchen with a central island, bar stools, and a large window.

A spacious living area with a large sofa, a coffee table, and a dining table with chairs. There is a ceiling fan and a floor lamp.

A deck with two wooden chairs and a fire pit.

A marina with boats docked, a parking area, and a view of the surrounding landscape.

1 Block to Lake City Marina: Condo w/ Rooftop Deck

Lake City

"Wonderful property, spacious, well-appointed and comfortable. Would definitely rent again."

Apartment

A bedroom with a bed, a chair, a table, a fireplace, and a ceiling fan.

A living room with a fireplace, a television mounted above it, and a large window offering a view of the outdoors.

A kitchen with wooden cabinets, stainless steel appliances, and a dining table with chairs.

A single-story house with a front porch, a small staircase leading to a deck, and a stone retaining wall.

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Wabasha

"Great property! Very convenient location as well."

Cottage

A modern interior with a stone fireplace, wooden walls, a leather sofa, and a dining area.

A cozy interior with a wooden ceiling, a fireplace, a red sofa, a leather couch, and a foosball table.

A log cabin interior with a wooden ceiling, a red sofa, a brown leather couch, and a person seated on a chair.

A kitchen with wooden cabinets, a stove, a sink, and a window with a view of trees.

Pet-friendly Cabin Retreat: Walk to Lake Pepin!

Pepin

"What a fun place! Plenty of room. We played foosball had a fire outside. We enjoyed the fireplace too. We hadn’t anticipated no TV though. You might want to add that to your description. The water is definitely smelly, so we truly appreciated the 40 bottles of water you provided. Definitely a great place for a girl’s weekend or family reunion!"

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Hotels recommended for families in Southeast Minnesota

Hampton Inn & Suites Rochester-North

Rochester

€105

includes taxes & fees

18 Oct - 19 Oct

EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kutzky Park

€137

includes taxes & fees

17 Oct - 18 Oct

A coffee shop interior with a wooden counter, menu boards, and seating area.

A hotel room with a bed, bedside table, and a window with curtains.

An outdoor seating area with tables and chairs, a neon sign, and flower arrangements.

TownePlace Suites by Marriott Rochester Mayo Clinic Area

Kutzky Park

€141

includes taxes & fees

23 Oct - 24 Oct

An outdoor seating area with wooden pillars, colorful striped cushions, and potted plants.

An indoor swimming pool with wooden ceiling beams, yellow chairs, and tables along the sides.

A modern lounge area with a sofa, chairs, and tables.

A modern hotel room with a bed, desk, and kitchenette.

Home2 Suites by Hilton Rochester Mayo Clinic Area

Rochester

€130

includes taxes & fees

24 Oct - 25 Oct

Hyatt House Rochester/Mayo Clinic Area

Downtown Rochester

€121

includes taxes & fees

17 Oct - 18 Oct

Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

€83

includes taxes & fees

10 Nov - 11 Nov

Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

Kutzky Park

€115

includes taxes & fees

17 Oct - 18 Oct

Comfort Inn & Suites West - Medical Center

Rochester

€92

includes taxes & fees

1 Nov - 2 Nov

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Stay near popular Southeast Minnesota attractions

A courtyard with a stone fountain, yellow buildings with arches, and a clear sky.

Villa Bellezza

8.4/10 (31 reviews)

You can enjoy a tasting or tour at Villa Bellezza during your travels to Pepin. While you're in the area, stroll along the lakeside.

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A cave with a reflective pool and illuminated walls.

Forestville Mystery Cave State Park

9.0/10 (22 reviews)

Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.

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Mayo Civic Center

9.2/10 (818 reviews)

Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.

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Apache Mall

8.6/10 (1,101 reviews)

During your visit to Rochester, you can find the perfect gifts to bring home at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Rochester Recreation Center

8.0/10 (205 reviews)

Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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National Volleyball Center

7.8/10 (151 reviews)

Catch an event at National Volleyball Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Welch Village Ski Area

8.6/10 (16 reviews)

Hit the slopes in Welch with a visit to Welch Village Ski Area. Stroll along the area's riverfront or simply enjoy its cafes.

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Shattuck-St. Mary's School

9.6/10 (69 reviews)

Explore the campus of Shattuck-St. Mary's School during your trip to Faribault. Visit the shops in this family-friendly area or simply enjoy its cafes.

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Learn more about Southeast Minnesota

Discover the family-friendly area of Southeast Minnesota—sports teams, a scenic riverfront and sights from Mayowood Mansion to Apache Mall.

See all hotels in Southeast Minnesota

A lake surrounded by dense forest and a distant hill with a fort.

Top Southeast Minnesota Hotel Reviews

St James Hotel, a Historic Hotel of America

10/10 Excellent

"We were able to enjoy a cocktail in the Port lounge. Great staff, so friendly. Had a great dinner at Scarlett’s too!"

Cobblestone Hotel & Suites - Austin

10/10 Excellent

"Very clean, comfortable room. Staff were friendly and helpful. Hotel was quiet with many convenient dining options nearby."

Express Suites Riverport Inn & Suites

8/10 Good

"Room was quiet. Nice little bar attached. Pool area big although we didn't use it. Breakfast was good, a number of options."

Kahler Grand Hotel

8/10 Good

"Staff was great and location is hard to beat when visiting the Mayo Clinic. Included breakfast would have been a huge benefit."

Hyatt House Rochester/Mayo Clinic Area

10/10 Excellent

"Very nice suite room, very quiet and restful. Front desk staff were helpful and great in helping us with dinner recommendations"

Med City Inn & Suites - Mayo Clinic Area

10/10 Excellent

"Great stay for the price. Will stay here again when visiting Rochester MN."

Super 8 by Wyndham Winona MN

8/10 Good

"Breakfast area is too small. On a busy morning you won’t have a place to sit."

EVEN Hotel Rochester - Mayo Clinic Area by IHG

8/10 Good

"Soap dispensers cumbersome to use hard to read labels. Stayed on fourth floor had elephants checking out at 4:15 am above me-no way normal people could make that much noise for 45 mins Happened next morning with new check in less obtrusive Will definitely request 5th with no one above. Have stayed several times so this was only this stay. Staff is stellar; Linda and Michelle most helpful"