A busy urban street at night with illuminated billboards and a prominent Epson sign.

Shinjuku Hotel Guide - Boutique Hotels in Shinjuku, Tokyo

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

Our top choices for Shinjuku boutique hotels

A spacious indoor pool area with lounge chairs and a high ceiling with a skylight.

1. Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo
5.0 star property
Bunkyo
9.8 out of 10, Exceptional, (1,134 reviews)
"Clean room, good service, beautiful garden and delicate food. Perfect stay for a week."
United States
Michael
The price is €282
13 Sept - 14 Sept
Hotel Chinzanso Tokyo
A hotel room with a large bed, a sofa, a small table, and a view of the cityscape.

2. The Capitol Hotel Tokyu

The Capitol Hotel Tokyu
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,001 reviews)
"Location os great"
United States
Yongsoo
The price is €670
18 Sept - 19 Sept
The Capitol Hotel Tokyu
A modern interior with large windows offering a city view, including a prominent tower.

3. The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic
4.0 star property
Taito
9.4 out of 10, Exceptional, (1,003 reviews)
"Location was phenomenal. Staff very helpful Rooms were spacious"
Australia
Beau
The price is €94
13 Sept - 14 Sept
The Gate Hotel Kaminarimon by Hulic
A modern spa with a large heated pool, a separate hot tub, and a sauna area.

4. The Tokyo Station Hotel

The Tokyo Station Hotel
4.5 star property
Chiyoda
9.8 out of 10, Exceptional, (1,000 reviews)
"Great location and very nice staff."
United States
Marie
The price is €580
17 Sept - 18 Sept
The Tokyo Station Hotel
An outdoor rooftop lounge with a sofa, coffee table, and planters, overlooking a city skyline at night.

5. Palace Hotel Tokyo

Palace Hotel Tokyo
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,000 reviews)
"Great hotel, great location, super helpful staff, and wonderful places to eat."
United Kingdom
Jaclyn
The price is €1,022
13 Sept - 14 Sept
Palace Hotel Tokyo
A restaurant with tables set for dining, large windows offering a city skyline view, and modern interior design.

6. Shangri-La Tokyo

Shangri-La Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (645 reviews)
"Great place, one of the best."
United States
arman
The price is €615
22 Sept - 23 Sept
Shangri-La Tokyo
A modern hotel room with a large window offering a city view, a sofa, a coffee table, and a dining area.

7. The Peninsula Tokyo

The Peninsula Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (1,000 reviews)
"The very best accommodation and our absolutely favorite stay of our trip. Thank you for your hospitality"
United States
Consuelo
The price is €854
13 Sept - 14 Sept
The Peninsula Tokyo
The exterior of Solaria Hotel with a modern facade, large glass entrance, and potted plants in front.

8. Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza
3.5 star property
Ginza
9.0 out of 10, Wonderful, (1,002 reviews)
"This hotel is in a great spot in Ginza, close to shops, restaurants and train stations. The staff are super helpful and rooms are clean. I’ve stayed there twice and would stay again."
Australia
Joanne
The price is €210
15 Sept - 16 Sept
Solaria Nishitetsu Hotel Ginza
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shinjuku Hotel Reviews

Shinjuku Prince Hotel

Shinjuku Prince Hotel

10/10 Excellent
"The rooms are exceptionally clean and reasonably spacious. I love the extra storage space under the beds. The location is also extremely convenient."
Joseph 11-night trip
Posted 2 days ago
Shinjuku Prince Hotel

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Disneyland®. You might also want to see interesting spots such as Tokyo DisneySea®, Shibuya Crossing and Tokyo Imperial Palace during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.

Explore a world of travel with Expedia