San Francisco Hotel Guide. Hotels in Mission Bay, San Francisco, United States of America

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2,509 reviews)
"Great location, clean, and very friendly staff."
United States
Fabienne
The price is €273
includes taxes & fees
28 Jun - 29 Jun
LUMA Hotel San Francisco

The Evergreen

The Evergreen
2.0 star property
20.3 km from Mission Bay
9.2 out of 10, Wonderful, (567 reviews)
"Excellent stay !!"
United States
Gina
The price is €152
includes taxes & fees
8 Jun - 9 Jun
The Evergreen

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7,533 reviews)
"Great location, nice breakfast."
United States
Jenny
The price is €217
includes taxes & fees
29 Jun - 30 Jun
Hotel Riu Plaza Fisherman's Wharf

Marin Lodge

Marin Lodge
2.0 star property
26.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,003 reviews)
"The room was clean and the staff were friendly! Location was great for our needs."
United States
Jeffrey
The price is €124
includes taxes & fees
9 Jun - 10 Jun
Marin Lodge

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.0 out of 10, Wonderful, (3,761 reviews)
"Location and friendly staff!"
United States
Andrew
The price is €196
includes taxes & fees
28 Jun - 29 Jun
Hotel Caza Fisherman's Wharf

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
20.5 km from Mission Bay
8.6 out of 10, Excellent, (2,997 reviews)
"Awseome place to stay, Good breakfast"
United States
Satish
The price is €107
includes taxes & fees
5 Jul - 6 Jul
Hilton San Francisco Airport Bayfront

The Marina Inn on San Francisco Bay

The Marina Inn on San Francisco Bay
3.5 star property
19.6 km from Mission Bay
8.6 out of 10, Excellent, (2,475 reviews)
"easy check in, clean room, plenty of onsite parking and friendly staff"
United States
Sonya
The price is €82
includes taxes & fees
7 Jun - 8 Jun
The Marina Inn on San Francisco Bay

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (2,622 reviews)
"Pleasure to stay in this hotel."
United States
Howard
The price is €189
includes taxes & fees
5 Jul - 6 Jul
Hotel Zephyr San Francisco

Hyatt Place San Francisco Downtown

Hyatt Place San Francisco Downtown
3.0 star property
0.9 km from Mission Bay
9.4 out of 10, Exceptional, (2,188 reviews)
"Great staff, clean and modern rooms, solid breakfast."
United States
Kama
The price is €171
includes taxes & fees
2 Jul - 3 Jul
Hyatt Place San Francisco Downtown

Holiday Inn Express Hotel & Suites Oakland-Airport by IHG

Holiday Inn Express Hotel & Suites Oakland-Airport by IHG
2.5 star property
17.7 km from Mission Bay
8.8 out of 10, Excellent, (1,006 reviews)
"I❤️ed every minute of My stay GRATFUL for the GREAT CUSTOMER SERVICE BY ALL STAFF I ENCOUNTERED"
United States
Nicole D
The price is €135
includes taxes & fees
8 Jun - 9 Jun
Holiday Inn Express Hotel & Suites Oakland-Airport by IHG

Hotel Zoe Fisherman's Wharf

Hotel Zoe Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.4 km from Mission Bay
9.2 out of 10, Wonderful, (1,921 reviews)
"great location, really nice room."
United States
Ethan
The price is €184
includes taxes & fees
6 Jul - 7 Jul
Hotel Zoe Fisherman's Wharf

Hyatt Regency San Francisco Airport

Hyatt Regency San Francisco Airport
4.0 star property
19.8 km from Mission Bay
9.0 out of 10, Wonderful, (1,371 reviews)
"After arriving from Australia Being pickup from the airport, checking in was a breeze, big beds were so comfy Definitely will be staying again"
Australia
Kenneth
The price is €180
includes taxes & fees
21 Jun - 22 Jun
Hyatt Regency San Francisco Airport

Inn at Rockaway San Francisco Pacifica

Inn at Rockaway San Francisco Pacifica
2.5 star property
20.2 km from Mission Bay
8.2 out of 10, Very good, (1,008 reviews)
"Fantastic location, amazing view, super friendly and helpful staff!"
United States
tabitha
The price is €144
includes taxes & fees
8 Jun - 9 Jun
Inn at Rockaway San Francisco Pacifica

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
12.8 km from Mission Bay
8.2 out of 10, Very good, (4,708 reviews)
"Loved my stay here!"
United States
Mark Jason
The price is €120
includes taxes & fees
5 Jul - 6 Jul
DoubleTree by Hilton Hotel Berkeley Marina

Marina Village Inn

Marina Village Inn
2.0 star property
11.2 km from Mission Bay
7.4 out of 10, Good, (1,006 reviews)
"Clean and simple hotel in a nice quiet neighborhood, looking out on a marina. Good sized room and comfortable bed. Very helpful staff. Will stay there again."
United States
John
The price is €113
includes taxes & fees
7 Jun - 8 Jun
Marina Village Inn

Aloft by Marriott San Francisco Airport

Aloft by Marriott San Francisco Airport
3.0 star property
18.7 km from Mission Bay
9.0 out of 10, Wonderful, (2,246 reviews)
"Very nice stay and staff! "
United States
Gjorgi
The price is €128
includes taxes & fees
6 Jun - 7 Jun
Aloft by Marriott San Francisco Airport

Bay Landing San Francisco Airport Hotel

Bay Landing San Francisco Airport Hotel
3.0 star property
19.3 km from Mission Bay
9.0 out of 10, Wonderful, (4,879 reviews)
"Clean room, great location, great stay"
United States
Benjamin
The price is €162
includes taxes & fees
30 Jun - 1 Jul
Bay Landing San Francisco Airport Hotel

Hotel Shattuck Plaza

Hotel Shattuck Plaza
4.0 star property
15.4 km from Mission Bay
9.0 out of 10, Wonderful, (1,234 reviews)
"Nice room… great location."
United States
Cameron
The price is €153
includes taxes & fees
28 Jun - 29 Jun
Hotel Shattuck Plaza

Hilton San Francisco Union Square

Hilton San Francisco Union Square
4.0 star property
Union Square, 2.4 km from Mission Bay
8.6 out of 10, Excellent, (1,345 reviews)
"Great place, nice breakfast and convenient. "
United States
Wallace
The price is €181
includes taxes & fees
3 Jul - 4 Jul
Hilton San Francisco Union Square

Cow Hollow Inn & Suites

Cow Hollow Inn & Suites
3.5 star property
Marina District, 5.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,650 reviews)
"Great location and parking garage was an added bonus!"
United States
Paula
The price is €147
includes taxes & fees
28 Jun - 29 Jun
Cow Hollow Inn & Suites
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Fisherman's Wharf

Soak up the atmosphere of bygone days on this historic wharf where the emphasis is still firmly on seafood.

Union Square

This famous shopping area is a magnet for fashionistas as well as a historic landmark of old San Francisco.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and San Francisco Bay are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

South of Market

From baseball games to top-notch art exhibits, find endless entertainment in one of San Francisco’s fastest-growing neighborhoods.

Nob Hill

Examine architecturally significant buildings, visit the Cable Car Museum and enjoy magnificent views of greater San Francisco in this affluent district.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
Travellers will be sure to enjoy their time in San Francisco's Mission Bay neighbourhood. Make sure that you visit Chase Center and Lefty O'Doul Bridge as part of your Mission Bay travel plans.
Where is the best place to stay in Mission Bay?
Based on our traveller data, LUMA Hotel San Francisco is one of the top choices for your stay in Mission Bay. This hotel is a short 5-minute walk from Oracle Park, and it offers a restaurant and a fitness centre.
How many hotels will I be able to find in Mission Bay?
When you want to put your feet up after a day of exploring the sights in San Francisco, you can choose from 14 Expedia hotels and other accommodation options in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel bookings are fully refundable provided that you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to review the best deals available in Mission Bay.
What are the top things to see and do in Mission Bay?
Chase Center, Lefty O'Doul Bridge and Lucky Strike San Francisco are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at Mission Rock Station, UCSF/Chase Center Stop or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.

Explore a world of travel with Expedia